Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq109 113 5e-20 seq110 91.5 2e-13 seq42 82.4 9e-11 >seq109 Length=150709 Score = 113 bits (124), Expect = 5e-20 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || |||| ||||| | ||| || ||| |||||| ||||| |||||| Sbjct 9057 TGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCT 8998 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| | || |||||| |||||||| ||||| || | Sbjct 8997 CGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCG 8938 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT--GTCGAA--CCACTTGAGAGC 119683 | ||| |||| || |||||||| || ||| || | | | ||| |||||||||||| Sbjct 8937 GAGAAGGCGACGAGTCGCTCAGCGAA-GGTGGACTCCTTGGACGAGATCCACTTGAGAGC 8879 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 ||| | |||||| || ||||||||||| Sbjct 8878 CCAATCGGCCTTTCGTCGAATGCAGGGGAC 8849 >seq110 Length=2325364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 274/414 (66%), Gaps = 17/414 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || ||||| || | ||||| || |||| || | ||||| || | Sbjct 1412775 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 1412834 Query 11563 GCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || ||| | || ||| |||| |||||||| || ||| || || Sbjct 1412835 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 1412891 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTG-----GAGGGCATACCACCTGCCGAACGCTTCT 11674 |||| |||| || ||||| ||||| || || || | ||| || | || || Sbjct 1412892 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGG-ATCCACCCTTCCCA-CGAGCCT 1412949 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| ||||| ||||| |||||||| | ||| || || ||| | || | || Sbjct 1412950 TTCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTT-CTTGGCCGTA 1413008 Query 11735 -CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || | | ||| || || ||||||||||| ||||| | | Sbjct 1413009 GCGAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAA 1413068 Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || || || | |||||| || || ||||| ||| ||||| |||| ||| || Sbjct 1413069 CCGGAG-ACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGT 1413127 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||| || || || || | |||| ||| | ||| || || ||||||||||| || Sbjct 1413128 CTTTCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCC 1413181 >seq42 Length=1914076 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 168392 TCAACTGTGCCACCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCC 168451 ||||||| | |||| | || | |||||| | ||| || || || || || || | Sbjct 1391959 TCAACTGCTCTCCCGACGCCTCTCGCACGTTGAGAAGCTTTCCTCGAAGAGGGAAGACTC 1391900 Query 168452 CATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCAC 168511 | || ||||||| || |||| | ||| || ||||| ||||| | ||| || ||||| | Sbjct 1391899 CGTAGTGATCTCGTCCGACGATGTCGAGTCCGGCGACGGCGAGCGCTTTGGCGGAATCTC 1391840 Query 168512 CCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGTGCCGTACCAGCTTTGTTCGCAT 168568 | || || | ||||| || || |||||| | || | || ||||||||||| || | Sbjct 1391839 CTTCGGTGAGAATGAGAGTGCAGAGCTTTCC-GTCTCGG--GTTCCAGCTTTGTTGGCGT 1391783 Query 168569 CGTCCAATTTGGGGATACCAGTGAT 168593 | || | |||| |||||||| ||| Sbjct 1391782 CTTCGAGTTTGACGATACCAGAGAT 1391758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974770512600