Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09]
167 sequences; 30,479,820 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq109 113 5e-20
seq110 91.5 2e-13
seq42 82.4 9e-11
>seq109
Length=150709
Score = 113 bits (124), Expect = 5e-20
Identities = 153/210 (73%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| || || |||| ||||| | ||| || ||| |||||| ||||| ||||||
Sbjct 9057 TGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCT 8998
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| ||||||| | || |||||| |||||||| ||||| || |
Sbjct 8997 CGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCG 8938
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT--GTCGAA--CCACTTGAGAGC 119683
| ||| |||| || |||||||| || ||| || | | | ||| ||||||||||||
Sbjct 8937 GAGAAGGCGACGAGTCGCTCAGCGAA-GGTGGACTCCTTGGACGAGATCCACTTGAGAGC 8879
Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713
||| | |||||| || |||||||||||
Sbjct 8878 CCAATCGGCCTTTCGTCGAATGCAGGGGAC 8849
>seq110
Length=2325364
Score = 91.5 bits (100), Expect = 2e-13
Identities = 274/414 (66%), Gaps = 17/414 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || ||||| || | ||||| || |||| || | ||||| || |
Sbjct 1412775 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 1412834
Query 11563 GCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGAAGCTGG 11619
|| | ||| || ||| | || ||| |||| |||||||| || ||| || ||
Sbjct 1412835 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 1412891
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTG-----GAGGGCATACCACCTGCCGAACGCTTCT 11674
|||| |||| || ||||| ||||| || || || | ||| || | || ||
Sbjct 1412892 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGG-ATCCACCCTTCCCA-CGAGCCT 1412949
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
| |||| ||||| ||||| |||||||| | ||| || || ||| | || | ||
Sbjct 1412950 TTCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTT-CTTGGCCGTA 1413008
Query 11735 -CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793
|||| || || || || | | ||| || || ||||||||||| ||||| | |
Sbjct 1413009 GCGAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAA 1413068
Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852
| || || || | |||||| || || ||||| ||| ||||| |||| ||| ||
Sbjct 1413069 CCGGAG-ACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGT 1413127
Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||| || || || || | |||| ||| | ||| || || ||||||||||| ||
Sbjct 1413128 CTTTCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCC 1413181
>seq42
Length=1914076
Score = 82.4 bits (90), Expect = 9e-11
Identities = 143/205 (70%), Gaps = 6/205 (3%)
Strand=Plus/Minus
Query 168392 TCAACTGTGCCACCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCC 168451
||||||| | |||| | || | |||||| | ||| || || || || || || |
Sbjct 1391959 TCAACTGCTCTCCCGACGCCTCTCGCACGTTGAGAAGCTTTCCTCGAAGAGGGAAGACTC 1391900
Query 168452 CATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCAC 168511
| || ||||||| || |||| | ||| || ||||| ||||| | ||| || ||||| |
Sbjct 1391899 CGTAGTGATCTCGTCCGACGATGTCGAGTCCGGCGACGGCGAGCGCTTTGGCGGAATCTC 1391840
Query 168512 CCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGTGCCGTACCAGCTTTGTTCGCAT 168568
| || || | ||||| || || |||||| | || | || ||||||||||| || |
Sbjct 1391839 CTTCGGTGAGAATGAGAGTGCAGAGCTTTCC-GTCTCGG--GTTCCAGCTTTGTTGGCGT 1391783
Query 168569 CGTCCAATTTGGGGATACCAGTGAT 168593
| || | |||| |||||||| |||
Sbjct 1391782 CTTCGAGTTTGACGATACCAGAGAT 1391758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588974770512600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |