Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq94 147 5e-30 seq17 114 3e-20 seq42 100 6e-16 seq58 96.9 8e-15 >seq94 Length=713063 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| |||||||| || || || |||||||| | ||| |||| ||||| || Sbjct 172950 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTC 173009 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| ||||| || || || ||||| || || || ||||| || Sbjct 173010 GAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTG 173069 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || |||||||||||| ||||| || | ||| | ||||| Sbjct 173070 GATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTT 173129 Query 195111 TCCTGTCAAAGTTTTTACGAA 195131 || || | || || ||||| Sbjct 173130 CCCCGTAAGGGTCTTAACGAA 173150 >seq17 Length=1662258 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || || ||||| || | ||||||| ||||| ||||||||||| || ||||||| Sbjct 950147 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950206 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | ||| || ||||| ||||| || || || || || || || || ||||||||| | Sbjct 950207 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 950266 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||||| || || || || ||||||| |||||||| || Sbjct 950267 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGT 950312 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || |||||||| | ||||||| ||||| ||||||||||| || |||||||| Sbjct 950578 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 950637 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| ||||| || || || || || || || || ||||||||| || Sbjct 950638 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 950697 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| || ||| || || || || | |||||||| || Sbjct 950698 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGT 950741 >seq42 Length=1914076 Score = 100 bits (110), Expect = 6e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||| | ||| || |||||||| || || || |||||||| | ||| || Sbjct 595694 TCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGT 595753 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || ||||||||||| || |||||||| ||||| || || || || || || || Sbjct 595754 TCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGGATACC 595813 Query 195039 TTCTTTGTCTTGAAT 195053 || |||||||| || Sbjct 595814 CTCCTTGTCTTGGAT 595828 >seq58 Length=1174589 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 194973 AAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG 195032 |||||||| ||||| ||||| || | ||||||||||| || |||||||| |||||||| Sbjct 151697 AAGAGTTCGGCCATCCTCGAGGTGTCTCCCTGCGAAGATGAGACGTTGTTGATCTGGAGG 151756 Query 195033 AATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || | |||||||||||| | | ||||| ||| || || ||||| Sbjct 151757 GATTCCCTGTTTGTCTTGAATCCTGTTCTTGATGTTGTCGATAGTGTC 151804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479226056089