Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq17 152 7e-32 seq114 105 9e-18 >seq17 Length=1662258 Score = 152 bits (168), Expect = 7e-32 Identities = 137/171 (80%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || ||||| || || ||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 951135 CCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAA 951076 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| || || |||||||| || || || |||||||||||||| || || ||||| Sbjct 951075 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 951016 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || || || || || ||||| |||||| | ||||||||| | || ||||| Sbjct 951015 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 950965 Score = 149 bits (164), Expect = 8e-31 Identities = 135/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||| ||| |||| Sbjct 950745 CCTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAA 950686 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || |||||||| || || || || || ||||| ||| | || || ||||| Sbjct 950685 GGCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 950626 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || ||||| || ||||| || || ||| | ||||||||| | || |||| Sbjct 950625 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 950576 Score = 138 bits (152), Expect = 1e-27 Identities = 134/171 (78%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| |||||||| || || ||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 950316 CCTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAA 950257 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| || |||||||| || || || || || ||||| ||| | || || ||||| Sbjct 950256 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 950197 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || ||||| || ||||| || || ||| | || |||||| | || ||||| Sbjct 950196 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 950146 >seq114 Length=1797367 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| |||||||| || ||||| || ||||| ||||| || || ||| || ||| Sbjct 842723 AACGACCAGGGAAACCGAACCACTCCTTCCTACGTCGCCTTCACCGACTCTGAGCGACTC 842664 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | ||||||||||| || || ||| || |||||||||| ||| | |||| ||||| Sbjct 842663 ATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTACCAACTCCATCTTCGACGCT 842604 Query 195494 AAGCGTCTTATTGGTCGCAAGTT 195516 ||||| || ||||| || ||||| Sbjct 842603 AAGCGACTCATTGGACGAAAGTT 842581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861026712240