Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq109 111 2e-18 seq6 100 3e-15 >seq109 Length=150709 Score = 111 bits (122), Expect = 2e-18 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||| ||| |||||| ||||||| || |||| |||||||||| |||||| | ||| Sbjct 9541 CACTCGCTTCTCGAAGAAGTTGGCTTTCCCCTGAAGCGAGATCATCTCCATGAAGTCGAA 9482 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 ||||||| | ||||||| ||| ||||||||| |||| || || |||||||| Sbjct 9481 GGGGTTGGAAGATCCCCAGTGCTTCTCGTTTCCGAGCGAGACGAGGAGTCGATCGGCGAC 9422 Query 868828 AAACTCGATGTACTGGCACATGAG 868851 ||||||||||||||||||||||| Sbjct 9421 GAACTCGATGTACTGGCACATGAG 9398 Score = 109 bits (120), Expect = 7e-18 Identities = 132/178 (74%), Gaps = 9/178 (5%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| || | || |||||||| || || |||||||||||||| ||||| Sbjct 9037 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCTCGCTTCTTGAGCCAGAAGAT 8978 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || ||| || ||||| ||||| ||||||||||||| ||| ||| ||| ||||| Sbjct 8977 GGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCGGAGAAGGCGACGAGTCGCTC 8918 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTT 869368 || |||||| || ||||||| ||||||||| | ||||| ||||||||| Sbjct 8917 AGCGAAGGTG--GA----CTCCTTGGACGAGATCCACTTGAGAGCCCAATCGGCCTTT 8866 >seq6 Length=1934737 Score = 100 bits (110), Expect = 3e-15 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1630200 CTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTT 1630259 ||||||||| | || || ||||| ||||||||||| |||||||| ||||| |||| Sbjct 647863 CTTGGAGATCATAGCACAAGACTTGAGGGTGTCGTAGATACCCTCGATGGAGTCCTCCTT 647804 Query 1630260 CATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGC 1630317 |||| ||||| |||||||||||| || ||||| | || ||||||||||||||| Sbjct 647803 CATGGAAACGAGGAAGCACGACGAGAGCTGAGGGTGAGGAGTACCGGCGTTGAAGAGC 647746 Score = 89.7 bits (98), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 ||||| ||| |||| || ||||| || || || || || || ||||||||| ||| Sbjct 648357 AAGAGATCAGGAATCCAAAGGGCGTAGAAAAGATCTCGAGCTCGAGACTCCTCCTTTCCG 648298 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAG 1628568 |||||||| ||||||| || |||||| ||||| |||||||| ||||| |||||| Sbjct 648297 TGGTTCTTCCTGAGGTCCAGGAAGTCGAAGATGTCCGCGTGCCAAGGCTCGAGGTAG 648241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125495197939