Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq38 109 9e-18 seq109 105 1e-16 seq6 89.7 8e-12 >seq38 Length=2072532 Score = 109 bits (120), Expect = 9e-18 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| ||||| |||| |||||| ||| || || ||| | | ||| || || |||| Sbjct 1609404 CCTTGGTTCCCTCGGAGATAGCGTGCTTGGAAAGCTCTCCGGGAAGGATGAGTCGGACGG 1609345 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-CGCCAGGCGGCCG 1485603 ||||||||||||| | || ||| ||| |||||| || | || || | Sbjct 1609344 CGGTCTGGATCTCCCTGGACGAGATGGTGGACTTCTTGTT-GTAAGAAGCGAGCTTGGAA 1609286 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||||| | |||| || |||| || |||||||| || ||||| | ||| ||||| | Sbjct 1609285 GCCTCGGAGGCGATTCGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATGGACATGGCC 1609226 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||||||||| || ||||||||| ||||| Sbjct 1609225 TTGTTGGAGATACCAGTGTCGGGGTGGACCTG 1609194 >seq109 Length=150709 Score = 105 bits (116), Expect = 1e-16 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||| ||| |||||| ||||||| || |||| |||||||||| |||||| | ||| Sbjct 9541 CACTCGCTTCTCGAAGAAGTTGGCTTTCCCCTGAAGCGAGATCATCTCCATGAAGTCGAA 9482 Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035 ||||||| | ||||||||||| |||||||| | || || || |||||||| Sbjct 9481 GGGGTTGGAAGATCCCCAGTGCTTCTCGTTTCCGAGCGAGACGAGGAGTCGATCGGCGAC 9422 Query 794036 GAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| || ||||||||||||||||| || |||||| Sbjct 9421 GAACTCGATGTACTGGCACATGAGAGCACAGTTCAT 9386 Score = 100 bits (110), Expect = 5e-15 Identities = 129/177 (73%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||||| |||||| || || |||||||| || || |||||||||||||| ||||| Sbjct 9037 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCTCGCTTCTTGAGCCAGAAGAT 8978 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || | ||| || ||||| ||||| ||||||||||||| ||| ||||||| ||||| Sbjct 8977 GGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCGGAGAAGGCGACGAGTCGCTC 8918 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCCACTCTGCCTTT 794529 || || || || | ||| | ||||||||| | ||||| || |||||| Sbjct 8917 AGCGAAGGT-----GGACTCCTTGGACGAGATCCACTTGAGAGCCCAATCGGCCTTT 8866 >seq6 Length=1934737 Score = 89.7 bits (98), Expect = 8e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| |||| || ||||| || || || ||||||||| ||||||||||| | | Sbjct 648344 TCCAAAGGGCGTAGAAAAGATCTCGAGCTCGAGACTCCTCCTTTCCGTGGTTCTTCCTGA 648285 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 |||| || |||||| || ||| |||||||| ||||| |||||| Sbjct 648284 GGTCCAGGAAGTCGAAGATGTCCGCGTGCCAAGGCTCGAGGTAG 648241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916228635448313