Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq94 111 2e-19 seq17 98.7 1e-15 seq42 82.4 7e-11 >seq94 Length=713063 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || |||||||| | || | | | |||||||| Sbjct 172954 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCA-TCCTCGAG 173012 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| |||||||| || |||||||| || |||||||| ||| Sbjct 173013 CTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGAT 173072 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | |||||| || | ||||| ||| || || Sbjct 173073 CTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCC 173132 Query 133634 GGTCAGAGTTTTTACGAAAATCT 133656 || || || || ||||| |||| Sbjct 173133 CGTAAGGGTCTTAACGAAGATCT 173155 >seq17 Length=1662258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||||| || ||||||||| | || ||||||||| ||||| || ||| | | Sbjct 950966 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 951025 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| || ||||| || |||||||| ||||||||||| |||||| ||||| | | Sbjct 951026 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 951085 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | | ||||||| || ||| || |||| ||| | ||| || ||||| || Sbjct 951086 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 951134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || | ||||||||||| |||||||| || ||||| Sbjct 950182 TCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTA 950241 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||||| || ||| || |||| ||| | | Sbjct 950242 TCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATG 950301 Query 133626 GTTTTGCCGGTCAG 133639 || || || || || Sbjct 950302 GTCTTTCCAGTGAG 950315 >seq42 Length=1914076 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||||||||| ||||| || |||||||| | | | | || |||||||| Sbjct 595710 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC--CGAAAGGGTTCGTCCGTCCTCGA 595767 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | ||||| |||||||| || || ||||| || |||||||| || Sbjct 595768 GCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGA 595827 Query 133573 TCT 133575 ||| Sbjct 595828 TCT 595830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419790859080