Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq94 143 3e-29 seq17 120 3e-22 >seq94 Length=713063 Score = 143 bits (158), Expect = 3e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| ||||| || ||||| || || | ||||| ||||| || | | Sbjct 173153 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 173094 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | ||||| || || |||||||||||||| || ||||| || |||||||| Sbjct 173093 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 173034 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || ||||| ||||| |||||||||| || ||||| | || || || |||| Sbjct 173033 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 172974 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| ||||| ||||| | || | |||||||| || ||| Sbjct 172973 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGGA 172932 >seq17 Length=1662258 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || ||||| |||||||| || || | ||| | || | ||| Sbjct 950744 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAAG 950685 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 950684 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 950625 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| |||||||||| ||| || || | || || || |||| |||| Sbjct 950624 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 950576 Score = 118 bits (130), Expect = 1e-21 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 950315 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 950256 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 950255 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 950196 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 ||||| |||||||||| ||| || || | ||||| || |||| ||||| Sbjct 950195 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 950146 Score = 114 bits (126), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 951134 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 951075 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 951074 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 951015 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 |||||||||||||| | || ||||| | || || || |||| ||||| Sbjct 951014 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 950965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309209477040