Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_028807.1 Length=43150 Score E Sequences producing significant alignments: (Bits) Value seq105 120 8e-23 >seq105 Length=60549 Score = 120 bits (132), Expect = 8e-23 Identities = 225/324 (69%), Gaps = 25/324 (8%) Strand=Plus/Minus Query 30708 CGGCGGCAACCCCCGCGCGATCAACAATTGGGACATCAACGC--CCGCAACGGGGTCGCG 30765 |||||||||||| |||||||||| |||||| |||||| |||| ||| | || Sbjct 46496 CGGCGGCAACCCGAACGCGATCAACCTGTGGGACTCCAACGCGGCCGC--CGGCCACCCG 46439 Query 30766 AGTAGGGGCCTCATGCAGGTGATCCCGCCGACCTTCGCCGCGTACGCGGGCAGGCTGCGC 30825 || |||| | | ||| ||||||| || ||||| || ||||| ||| | | Sbjct 46438 AGCCAGGGCTTGCTCCAGACGATCCCGAGCACGTTCGCGGCCTACGCCGGCCCGTTCAAG 46379 Query 30826 GGCCGGGGCATCTGGGACCCGTTGGCCAACATCTACGCGAGCATGCGCTACGCCATGTCG 30885 ||||| |||||| |||||| ||||||||||||||||| || | |||||||||| Sbjct 46378 GGCCGCGGCATCCTCGACCCGCTGGCCAACATCTACGCGGGCGTCAACTACGCCATGCAC 46319 Query 30886 AGGTACGGCTCGCTGTCgcgg----gcgt-acaacc-ggccgggcggctacgcctcgggc 30939 | |||||||| |||| || |||| | ||| ||||||| ||||||||| |||| Sbjct 46318 CGATACGGCTC---GTCGTGGGTCAGCGTGATGACCAGGCCGGGTGGCTACGCCAAGGGC 46262 Query 30940 -----gggcggc---cgcggccgggcgagg----tcgcgtgggtcggcgAACGGGGCCCC 30987 ||||| | || || ||||| | | |||||||| || || || ||| || Sbjct 46261 ACGAAGGGCGCCGCGCGGGGTGCGGCGAAGGGCCTGGCGTGGGTTGGGGAGCGCGGCGCC 46202 Query 30988 GAGCTGCTCCAGTTCGGCGGCGGC 31011 |||||| | | ||| ||||||| Sbjct 46201 GAGCTGGTGAATTTCTCCGGCGGC 46178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137958126411248