Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq94 145 2e-29 seq17 129 1e-24 seq42 87.8 4e-12 seq109 84.2 5e-11 >seq94 Length=713063 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| |||| || | ||| || || ||||||||||| || | | Sbjct 172933 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 172992 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || || || || ||||| | || || || ||| || Sbjct 172993 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 173052 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| || || ||| | ||||| |||||||||| || || Sbjct 173053 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 173112 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 || | ||||| ||||| ||||| | ||||||||||| |||| Sbjct 173113 TCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 173155 >seq17 Length=1662258 Score = 129 bits (142), Expect = 1e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||||||||||| | || || || |||||||| || || || || || |||| Sbjct 950147 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950206 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||| || || |||||| || || |||||||| || |||||||| || || ||| ||| Sbjct 950207 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 950266 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||| ||||| || | ||||| ||||| || || ||||| || || Sbjct 950267 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGT 950312 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | || || || |||||||| || || || || || |||||| Sbjct 950578 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 950637 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| || || |||||||| || |||||||| || || ||| | ||| Sbjct 950638 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 950697 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| || | ||| || ||||||||||| ||||| || || Sbjct 950698 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGT 950741 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| ||||||||||| || | || || || || ||||| ||||| || || || |||| Sbjct 950966 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 951025 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | ||||| || ||| || || || |||||||| |||||||| || || ||| ||| Sbjct 951026 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 951085 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||| ||||| || | ||||| ||||| || || ||||| || || Sbjct 951086 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGT 951131 >seq42 Length=1914076 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || |||| || | ||| || || ||||||||||| || | Sbjct 595688 ACCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 595747 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || || || ||||| ||||| | || || || ||| || Sbjct 595748 AAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGG 595807 Query 282992 AATACCCTCCTTGTCTTGGATCT 283014 |||||||||||||||||||||| Sbjct 595808 GATACCCTCCTTGTCTTGGATCT 595830 >seq109 Length=150709 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 230232 ATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCG 230291 ||||| || ||||||| | || || ||||| ||||| || ||||| | |||| || Sbjct 9386 ATGAACTGTGCTCTCATGTGCCAGTACATCGAGTTCGTCGCCGATCGACTCCTCGTCTCG 9445 Query 230292 CTAGGGTACGAGAA--AGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTT 230349 || || ||||||| | || | || | | ||||||||| || |||||| | || | Sbjct 9446 CTCGGAAACGAGAAGCACTGGGGATCTTCCA--ACCCCTTCGACTTCATGGAGATGATCT 9503 Query 230350 CACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 | || ||||||||| | ||||||||||| ||||| || Sbjct 9504 CGCTTCAGGGGAAAGCCAACTTCTTCGAGAAGCGAGT 9540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736960305218