Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq94 127 1e-24 seq17 107 1e-18 >seq94 Length=713063 Score = 127 bits (140), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||| | || || | || || Sbjct 172951 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 173010 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | ||| | ||| ||||| ||| Sbjct 173011 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 173070 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||||| || || ||||| Sbjct 173071 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 173130 Query 44309 CCCGTGAGGGTCTTCACGAAGAT 44331 ||||| |||||||| |||||||| Sbjct 173131 CCCGTAAGGGTCTTAACGAAGAT 173153 >seq17 Length=1662258 Score = 107 bits (118), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 44143 GCTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201 |||| ||||| |||||||||||||||| ||| || |||| || || ||||| || | Sbjct 950960 GCTCACCTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAG 951019 Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | ||||| | || |||||||| | ||| | |||||||| ||| ||||| ||| | Sbjct 951020 CGAAGATGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGA 951079 Query 44262 ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 951080 CGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGG 951135 Score = 98.7 bits (108), Expect = 7e-16 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | ||| || | || || |||||||| || || ||| Sbjct 950146 CCTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAG 950205 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 950206 ATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTA 950265 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 950266 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAGG 950316 Score = 95.1 bits (104), Expect = 9e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| | ||| || | || || |||||||| || || |||| Sbjct 950576 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950635 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 950636 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT 950695 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||||| ||||| | || || |||||||| || ||| Sbjct 950696 CGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAGG 950745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989667307039