Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17 161 2e-34 seq94 154 4e-32 seq42 98.7 2e-15 seq58 95.1 3e-14 >seq17 Length=1662258 Score = 161 bits (178), Expect = 2e-34 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 951134 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 951075 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| |||||||||||||| || ||||||||||| |||||||| ||| Sbjct 951074 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 951015 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || || ||||| || ||| | || || ||||||| ||| |||| |||| Sbjct 951014 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAG 950966 Score = 147 bits (162), Expect = 5e-30 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 950315 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 950256 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 950255 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 950196 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || |||||||| ||||| | ||||| | || || ||| |||| |||| Sbjct 950195 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAG 950147 Score = 143 bits (158), Expect = 6e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| |||||||| ||| || ||||||||||| |||||||| Sbjct 950744 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAAG 950685 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 950684 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 950625 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| ||||| | ||||| | ||||| ||| |||| || Sbjct 950624 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAA 950578 >seq94 Length=713063 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || || || || || || |||||| | |||||||| || |||||| Sbjct 173153 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 173094 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| || || |||||||| || ||||| ||| Sbjct 173093 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 173034 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||||||| ||||| |||||||| |||||| | || ||| | ||||| ||| |||| Sbjct 173033 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 172974 Query 178107 AAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || |||| || Sbjct 172973 AAGGAGTCCACCCTTCA-CTTGGTT 172950 >seq42 Length=1914076 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| || || ||||| || || ||||| ||||| |||||||||||||| | Sbjct 595830 AGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGC 595771 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||| || ||| | || ||| | ||||| ||| |||| || || || || || || Sbjct 595770 AGCTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCACT 595711 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||| | ||||| || Sbjct 595710 TGGTTCTCCGACTCCGA 595694 >seq58 Length=1174589 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 |||||| ||||| ||||| ||| |||| | | |||||| |||||| | ||||||||| Sbjct 151813 GAAAGCAGCGACACTATCGACAACATCAAGAACAGGATTCAAGACAAACAGGGAATCCCT 151754 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 || || || ||||| || |||||||| || | ||| ||||| ||||| | |||||| Sbjct 151753 CCAGATCAACAACGTCTCATCTTCGCAGGGAGACACCTCGAGGATGGCCGAACTCTT 151697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728624391398