Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq712 132 5e-26 seq141 111 2e-19 seq44 111 2e-19 seq233 95.1 1e-14 >seq712 Length=12724 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||| | || ||| || |||||| ||||| || Sbjct 5963 AAGGCCGATTGGGCTCTCAAGTGGATCTCGTCCAAGGAGTCCACCTTCGCTGAGCGACTC 6022 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || |||||| | ||||||||||| ||||||| || || ||||| |||| || ||| Sbjct 6023 GTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCTGG 6082 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || || |||||||| || || ||| ||||||| | ||||| |||||| Sbjct 6083 CTCAAGAAGCGAGGACTAATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGAC 6142 Query 117164 GAGGGTCTGCA 117174 ||||| || || Sbjct 6143 GAGGGACTTCA 6153 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || |||||| ||||| || || || ||||| || |||||| |||||||||||||| Sbjct 5560 CACTTCATCTCCCACGTCCTCGCTTTCTTCGCTGCTTCCGACGGTATCGTCAACGAGAAC 5619 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || ||||||| ||| | |||||||| ||| |||||||| || ||||||||||| || Sbjct 5620 CTCATCGAGCGATTCTCGCAGGAGGTTCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTC 5679 Query 116861 CAGATC 116866 |||||| Sbjct 5680 CAGATC 5685 >seq141 Length=45857 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || || || ||||| || ||||||||| | || || || | | |||| | Sbjct 44536 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 44477 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| ||||| ||||| | || ||||| || Sbjct 44476 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCG 44418 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 |||||||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 44417 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 44358 Query 40875 GAAGGAGGCCACGCTGCA 40892 ||||||| |||| || || Sbjct 44357 GAAGGAGTCCACCCTTCA 44340 >seq44 Length=75583 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 47286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 47228 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| || || ||||| | || |||||||||||||||| ||| || Sbjct 47227 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 47168 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || || || || |||| || |||||| ||| |||||||||||||| Sbjct 47167 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAA 47120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 45684 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 45626 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 45625 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 45566 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || ||||| || || | || || ||| ||||||||||||||||| Sbjct 45565 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAA 45518 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| |||| ||||| | |||| | | | |||| |||| Sbjct 46504 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACG-TCAA 46446 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || |||| ||||| ||||| || || | ||||| || |||||||||| ||| || Sbjct 46445 AGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGG 46386 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || || | || ||||| |||||||||||||||||||| Sbjct 46385 AAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 46336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| | || ||||| || | |||| | | | |||| |||| Sbjct 46113 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACG-TCAA 46055 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 46054 GGCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 45995 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || || | || || ||| || |||||||||||||||| Sbjct 45994 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 45945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| |||| || ||| | |||||| | | | |||| |||| Sbjct 46896 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACG-TCAA 46838 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | || | ||| || Sbjct 46837 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCCGG 46778 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || || | |||||||||||||||||||| Sbjct 46777 AAAGCAGCTCGAGGACGGTCGAACTTTGTCCGACTACAACATCCAGAAGG 46728 >seq233 Length=35643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | || ||||| |||||||||| ||| || || ||||| || Sbjct 27128 GACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAG 27069 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || ||||| || |||||||||||||||||| |||| || || Sbjct 27068 GACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCA 27019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209288470640