Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq141 100 2e-16 seq44 86.0 5e-12 >seq141 Length=45857 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| || || || | || || Sbjct 44334 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 44393 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| || || ||||| | ||||||||||||| Sbjct 44394 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 44453 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||||||||||| ||| || ||||| Sbjct 44454 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 44513 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 ||||| || ||||| || ||||| Sbjct 44514 CCCGTAAGGGTCTTAACGAAGAT 44536 >seq44 Length=75583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||| |||||||||||| | |||| ||| |||| || || || ||||||||||| Sbjct 46728 CCTTCTGGATGTTGTAGTCGGACAAAGTT--CGACCGTCCTCGAGCTGCTTTCCGGCGAA 46785 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| || || ||||| | ||||||||| ||| Sbjct 46786 AATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 46825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067789747319