Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq892 84.2 3e-12 seq749 80.6 4e-11 seq210 80.6 4e-11 seq64 80.6 4e-11 seq43 80.6 4e-11 >seq892 Length=8274 Score = 84.2 bits (92), Expect = 3e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16467 TCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG 16526 |||| || ||||||||||| || ||||| || |||| || || || ||||||||||| Sbjct 147 TCCAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAA 206 Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 207 TCTCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 255 >seq749 Length=11809 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 264 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 205 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 204 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 158 >seq210 Length=37535 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 11837 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 11778 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 11777 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 11731 >seq64 Length=67171 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 35852 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 35911 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 35912 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 35958 >seq43 Length=75875 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 75615 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 75674 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 75675 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 75721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073792881527