Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq233 96.9 3e-15 seq141 93.3 4e-14 seq44 93.3 4e-14 >seq233 Length=35643 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || ||||||||||||||||| || || ||||| || || || || || ||||| || ||| Sbjct 27134 ATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 27075 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | ||||| || ||| | || ||||||||||| || || || |||||| | || || Sbjct 27074 CTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCACTTG 27015 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||| | ||| | || |||||| Sbjct 27014 GTTCTCCGACTCCGAGGAGGT 26994 >seq141 Length=45857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 || || ||||| || | || || || || |||| | || ||||| | | || ||| Sbjct 44536 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 44477 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | ||| | |||| || || || |||||||||||||| || || ||||| || || Sbjct 44476 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 44417 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || || || || || ||| | |||||| || ||| | || ||||||||||| || Sbjct 44416 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 44357 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||| | || || ||| | || | || ||||| Sbjct 44356 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGG 44316 >seq44 Length=75583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | ||||||| | ||| | ||||| Sbjct 46501 ACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAAGCC 46442 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || ||||| || || || || ||||| || Sbjct 46441 AAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGAAAG 46382 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | || ||| || ||| | ||||| |||||||| || || Sbjct 46381 CAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAA 46338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720127345535