Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq274 131 3e-25 seq712 125 1e-23 >seq274 Length=32796 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| ||| | |||| ||||||| |||| |||||||| |||| Sbjct 29663 CCCCACATGTCGTACTGGAGCTGACCCTGCGAGACGGGGGATCCCTGGTAGGTCGAGTAG 29722 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | || || || || | || || | ||||| ||||||| ||||||||||||| Sbjct 29723 GCTCCCTCCTTCTCAGCGATCTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTCTCG 29782 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| |||| | | ||||| | | | |||||| || | | |||||| Sbjct 29783 AAGATCTGGATGTTGAGCTTCTTGGCCTCGGGTCCGTCGAAGGGCATTCGAAGGATCATG 29842 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| | ||||| ||||||||||| |||| |||||||||| ||||||| |||||||| Sbjct 29843 AAGGCATCGGCGAGTCCCTGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAG 29899 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||||||| ||||| || | | ||||| || ||||| ||||||||| Sbjct 30123 GCCAAGTTGCAGACGGCGACCTCGTCGGGAGCAGAGTACTCGATGATCTCCGTGCAGAGG 30182 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| |||||||||| || |||| || || |||||||| |||| ||||||| || Sbjct 30183 TTAGACGACTTGATGGTTCCGAGGTTCTTCTGGTTGGACTTCTGGTTGGCGGCGTCC-TG 30241 Query 244808 TAGA 244811 |||| Sbjct 30242 TAGA 30245 >seq712 Length=12724 Score = 125 bits (138), Expect = 1e-23 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC--GACGCAACGTTCGGCGAGAGGC 42705 ||||| || ||||| ||||| |||||| | ||| || | || |||| ||| | | Sbjct 5963 AAGGCCGATTGGGCTCTCAAGTGGATCTCG--TCCAAGGAGTCCACCTTCGCTGAGCGAC 6020 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | || ||||| ||||||||||||| ||||||||||| || | ||||| |||||||||| Sbjct 6021 TCGTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCT 6080 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || ||| | ||||||||||| || ||||| ||||| | ||| ||| Sbjct 6081 GGCTCAAGAAGCGAGGACT-AATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGG 6139 Query 42825 GACGAGGGGCTGCA 42838 |||||||| || || Sbjct 6140 GACGAGGGACTTCA 6153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944321033274640