Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq141 109 6e-19 seq233 82.4 8e-11 >seq141 Length=45857 Score = 109 bits (120), Expect = 6e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | ||||| || | ||| |||||| || || |||||||| | Sbjct 44316 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 44375 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| |||||||| |||||||||||||| || | || Sbjct 44376 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 44435 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || |||| ||| | | | ||||| || ||||| Sbjct 44436 ATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCAC 44494 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 || | |||||||| || ||||| || ||||| || ||||| Sbjct 44495 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGAT 44536 >seq233 Length=35643 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | || | ||||| || | ||| |||||| || || |||||||| | Sbjct 26994 ACCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 27053 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || ||||| |||||||||||||| || | || Sbjct 27054 AAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGG 27113 Query 42101 CACGCTCTCCTTGTC 42115 | | ||||||||| Sbjct 27114 GATACCCTCCTTGTC 27128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543202349943760