Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq109 104 3e-17 >seq109 Length=52016 Score = 104 bits (114), Expect = 3e-17 Identities = 297/452 (66%), Gaps = 11/452 (2%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| || || ||||| || | ||| || ||| || | || |||||||| | Sbjct 17497 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 17556 Query 12762 GCGATGACAACGATGCCCGTCTCGTT--ATC-GAAGCCATCCATCTCAGTCAAGAGTTGA 12818 |||| ||| |||||| | ||||| ||| ||| || |||||||| | ||||||| Sbjct 17557 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 17613 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGG----GCATACCACCCGCACTGCGTTGCTT 12874 |||| || || || || || ||| | | || |||||| | || ||| Sbjct 17614 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGGAT-CCACCCTTCCCACGAGCCTT 17672 Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 |||| |||||| || ||||| ||||| | ||| || || || | ||| | Sbjct 17673 TCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTTCTTGGCCGTAGC 17732 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 |||| |||||| ||||| || ||||| || || ||||||||||| || | | | Sbjct 17733 GAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAACC 17792 Query 12995 GGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| || |||||| ||| | |||||| ||| ||||| ||||| ||||||||| Sbjct 17793 GGAGACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGTCTT 17852 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAA 13114 || || || || || | ||| | ||| || || |||||| |||| || | | Sbjct 17853 TCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCCGAGGGCGAG 17912 Query 13115 GTAGCGCTCGGGTTGTTTAAGAAAGTCCACGA 13146 | |||| |||||||||| || || | |||| Sbjct 17913 GAAGCGAGCGGGTTGTTTGAGGAACTTGACGA 17944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495397655240