Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq712 111 2e-19 seq141 96.9 3e-15 seq44 93.3 4e-14 >seq712 Length=12724 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 ||||||||||| || || | |||||| ||| || | |||||||| || || || || Sbjct 6147 CCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCTCGCTTC 6088 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| ||||| || || ||||||| ||||||||||| | ||| Sbjct 6087 TTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCGGAGAAG 6028 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || || || ||||| |||| |||| || ||| | |||||| || ||||| ||| Sbjct 6027 GCGACGAGTCGCTCAGCGAAGGTGGACTCCTTGGACGAGATCCACTTGAGAGCCCAATCG 5968 Query 133096 GCCTTT 133101 |||||| Sbjct 5967 GCCTTT 5962 >seq141 Length=45857 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||| || || || ||||| || ||||||||| | || || ||| | | |||| | Sbjct 44536 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 44477 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || | || |||| ||||| ||||| || || | || || ||||| Sbjct 44476 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCG 44418 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 44417 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 44358 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || || || ||||| || ||| | |||| || Sbjct 44357 GAAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGG 44316 >seq44 Length=75583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || || |||||||| |||| |||||| | |||| | | | |||| | || Sbjct 46504 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACG-TCAA 46446 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | ||||| ||||| ||||| | ||||||||||| ||||| | ||| || Sbjct 46445 AGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGG 46386 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 || ||||| || || | || ||||| ||||||||||||||| |||| Sbjct 46385 AAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 46336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||| ||| |||| |||||| || |||||| | | | |||| | || Sbjct 47286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 47228 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| || ||||| || | || || || || ||||| | ||| || Sbjct 47227 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 47168 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || || || || |||| || |||||| ||| ||||||||||| ||||| Sbjct 47167 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 47117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||| ||| |||| |||||| || |||||| | | | |||| | || Sbjct 45684 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 45626 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| || || |||||||| || | ||||| ||||| | || | ||| || Sbjct 45625 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 45566 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || ||||| || || | || || ||| |||||||||||||| ||||| Sbjct 45565 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 45515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163177925760