Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq712 113 5e-20 seq109 91.5 2e-13 seq622 82.4 9e-11 >seq712 Length=12724 Score = 113 bits (124), Expect = 5e-20 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || |||| ||||| | ||| || ||| |||||| ||||| |||||| Sbjct 6153 TGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCT 6094 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| | || |||||| |||||||| ||||| || | Sbjct 6093 CGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCG 6034 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT--GTCGAA--CCACTTGAGAGC 119683 | ||| |||| || |||||||| || ||| || | | | ||| |||||||||||| Sbjct 6033 GAGAAGGCGACGAGTCGCTCAGCGAA-GGTGGACTCCTTGGACGAGATCCACTTGAGAGC 5975 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 ||| | |||||| || ||||||||||| Sbjct 5974 CCAATCGGCCTTTCGTCGAATGCAGGGGAC 5945 >seq109 Length=52016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 274/414 (66%), Gaps = 17/414 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || ||||| || | ||||| || |||| || | ||||| || | Sbjct 17497 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 17556 Query 11563 GCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || ||| | || ||| |||| |||||||| || ||| || || Sbjct 17557 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 17613 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTG-----GAGGGCATACCACCTGCCGAACGCTTCT 11674 |||| |||| || ||||| ||||| || || || | ||| || | || || Sbjct 17614 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGG-ATCCACCCTTCCCA-CGAGCCT 17671 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| ||||| ||||| |||||||| | ||| || || ||| | || | || Sbjct 17672 TTCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTT-CTTGGCCGTA 17730 Query 11735 -CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || | | ||| || || ||||||||||| ||||| | | Sbjct 17731 GCGAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAA 17790 Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || || || | |||||| || || ||||| ||| ||||| |||| ||| || Sbjct 17791 CCGGAG-ACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGT 17849 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||| || || || || | |||| ||| | ||| || || ||||||||||| || Sbjct 17850 CTTTCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCC 17903 >seq622 Length=15186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 168392 TCAACTGTGCCACCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCC 168451 ||||||| | |||| | || | |||||| | ||| || || || || || || | Sbjct 6283 TCAACTGCTCTCCCGACGCCTCTCGCACGTTGAGAAGCTTTCCTCGAAGAGGGAAGACTC 6224 Query 168452 CATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCAC 168511 | || ||||||| || |||| | ||| || ||||| ||||| | ||| || ||||| | Sbjct 6223 CGTAGTGATCTCGTCCGACGATGTCGAGTCCGGCGACGGCGAGCGCTTTGGCGGAATCTC 6164 Query 168512 CCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGTGCCGTACCAGCTTTGTTCGCAT 168568 | || || | ||||| || || |||||| | || | || ||||||||||| || | Sbjct 6163 CTTCGGTGAGAATGAGAGTGCAGAGCTTTCC-GTCTCGG--GTTCCAGCTTTGTTGGCGT 6107 Query 168569 CGTCCAATTTGGGGATACCAGTGAT 168593 | || | |||| |||||||| ||| Sbjct 6106 CTTCGAGTTTGACGATACCAGAGAT 6082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964669574200