Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq274 123 5e-23 seq712 87.8 3e-12 >seq274 Length=32796 Score = 123 bits (136), Expect = 5e-23 Identities = 273/401 (68%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 212958 GAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGC 213017 || ||||| ||||||| || ||||||| ||||| ||||| || || || ||| Sbjct 29513 GAGGTGTAAGGCTCGAAGCACTCGTTGAAACCCAGGATCTGACTCGTTGAAGCAGTAGGC 29572 Query 213018 ATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTC 213076 || ||||| || ||||| |||||| | |||||| || |||| ||| || | Sbjct 29573 ATAGGAGCGACAAGGAGCGAGTTCCTGATTCCGTGGACGGCGATCTTGGCTTTGAGGGAA 29632 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 ||||||||||| | | | ||| | || ||||||||| |||| | Sbjct 29633 -GCCCAGTCCCAAAGGTCGGT-AGGAG--------TAACACCCCACATGTCGTACTGGA- 29681 Query 213137 GATGCCTTTGCTC-ACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCA 213195 | || | ||| |||||| |||||||| | ||||||| || | || || || | Sbjct 29682 GCTGACCCTGCGAGACGGGGGATCCCTGGTAGGTCGAGTAGGCTCCCTCCTTCTCAGCGA 29741 Query 213196 GCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCT 213255 |||||| || |||| || || |||| ||||||||| || || |||| ||||||||| Sbjct 29742 TCTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCT 29801 Query 213256 TCTTGGCCTCTGGGGACGT-GAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 |||||||||| ||| ||| ||||||||| | | ||| |||| || || ||| Sbjct 29802 TCTTGGCCTC-GGGTCCGTCGAAGGGCATTCGAAGGATCATGAAGGCATCGGCGAGTCCC 29860 Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT 213355 || || |||| |||||||||| ||||| || ||| || || Sbjct 29861 TGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAGTT 29901 >seq712 Length=12724 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48144 TGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCC 48203 |||| | || ||||||| ||| | | |||||||||| || || ||||| | | Sbjct 6155 TGTGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTC 6096 Query 48204 CCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTG 48263 | | || ||||||||||| || | ||||| || |||||||||||||| ||||| || | Sbjct 6095 CTCGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGG 6036 Query 48264 CCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCG 48323 | | ||| ||| ||| | ||| |||| | | | |||| |||||||| || | Sbjct 6035 CGGAGAAGGCGACGAGTCGCTCAGCGAAGGTGGACTCCTTGGACGAGATCCACTTGAGAG 5976 Query 48324 CCCAGTCTGCCTT 48336 |||| || ||||| Sbjct 5975 CCCAATCGGCCTT 5963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931514879637760