Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq479 109 9e-18 seq712 105 1e-16 seq274 89.7 8e-12 >seq479 Length=21064 Score = 109 bits (120), Expect = 9e-18 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| ||||| |||| |||||| ||| || || ||| | | ||| || || |||| Sbjct 10136 CCTTGGTTCCCTCGGAGATAGCGTGCTTGGAAAGCTCTCCGGGAAGGATGAGTCGGACGG 10195 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-CGCCAGGCGGCCG 1485603 ||||||||||||| | || ||| ||| |||||| || | || || | Sbjct 10196 CGGTCTGGATCTCCCTGGACGAGATGGTGGACTTCTTGTT-GTAAGAAGCGAGCTTGGAA 10254 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||||| | |||| || |||| || |||||||| || ||||| | ||| ||||| | Sbjct 10255 GCCTCGGAGGCGATTCGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATGGACATGGCC 10314 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||||||||| || ||||||||| ||||| Sbjct 10315 TTGTTGGAGATACCAGTGTCGGGGTGGACCTG 10346 >seq712 Length=12724 Score = 105 bits (116), Expect = 1e-16 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||| ||| |||||| ||||||| || |||| |||||||||| |||||| | ||| Sbjct 6637 CACTCGCTTCTCGAAGAAGTTGGCTTTCCCCTGAAGCGAGATCATCTCCATGAAGTCGAA 6578 Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035 ||||||| | ||||||||||| |||||||| | || || || |||||||| Sbjct 6577 GGGGTTGGAAGATCCCCAGTGCTTCTCGTTTCCGAGCGAGACGAGGAGTCGATCGGCGAC 6518 Query 794036 GAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| || ||||||||||||||||| || |||||| Sbjct 6517 GAACTCGATGTACTGGCACATGAGAGCACAGTTCAT 6482 Score = 100 bits (110), Expect = 5e-15 Identities = 129/177 (73%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||||| |||||| || || |||||||| || || |||||||||||||| ||||| Sbjct 6133 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCTCGCTTCTTGAGCCAGAAGAT 6074 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || | ||| || ||||| ||||| ||||||||||||| ||| ||||||| ||||| Sbjct 6073 GGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCGGAGAAGGCGACGAGTCGCTC 6014 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCCACTCTGCCTTT 794529 || || || || | ||| | ||||||||| | ||||| || |||||| Sbjct 6013 AGCGAAGGT-----GGACTCCTTGGACGAGATCCACTTGAGAGCCCAATCGGCCTTT 5962 >seq274 Length=32796 Score = 89.7 bits (98), Expect = 8e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| |||| || ||||| || || || ||||||||| ||||||||||| | | Sbjct 30665 TCCAAAGGGCGTAGAAAAGATCTCGAGCTCGAGACTCCTCCTTTCCGTGGTTCTTCCTGA 30724 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 |||| || |||||| || ||| |||||||| ||||| |||||| Sbjct 30725 GGTCCAGGAAGTCGAAGATGTCCGCGTGCCAAGGCTCGAGGTAG 30768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916082689550621