Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq274 132 5e-26 seq712 107 2e-18 >seq274 Length=32796 Score = 132 bits (146), Expect = 5e-26 Identities = 265/393 (67%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 20071 GGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||| || || || || ||||| ||||| || |||| |||| || ||||| || ||||| Sbjct 29908 GGCTCGAAACTCCAACATGCGACACCGACCCATCGGAGTCGGAGTGCAGGGACTCGCCGA 29849 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 | |||||||| || | | | ||||||| ||| |||| ||||||||| Sbjct 29848 TGCCTTCATGATCCTTCGAATGCCCTTCGACGGACCCGAGGCCAAGAAGCTCAACATCCA 29789 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGA 20250 ||||||||| || | |||||||| || ||| || |||||||| |||| | |||| Sbjct 29788 GATCTTCGAGACCATCTACCACGCCGCTCTCGAGGCTTCGTGCGAGATCGCTGAGAAGGA 29729 Query 20251 CGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACAT 20310 || | ||| ||| | | |||| || |||| || ||||| |||||| ||||| Sbjct 29728 GGGAGCCTACTCGACCTACCAGGGATCCCCCGTCTCGCAGGGTCAGCTCCAGTACGACAT 29669 Query 20311 GTGGGGCGTCACTGAGAATGAGTTTTGGAGC------GCCCTCAAGGTTGAGATCAAGAC 20364 |||||| || ||| | || ||||| | ||||||| | ||||| Sbjct 29668 GTGGGGTGTTACTCCTACCGACCTTTGGGACTGGGCTTCCCTCAAAGCCAAGATCGCCGT 29609 Query 20365 CCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGAT 20424 |||||| | | |||||| | || ||||| || ||||| || || || || ||||| Sbjct 29608 CCACGGAATCAGGAACTCGCTCCTTGTCGCTCCTATGCCTACTGCTTCAACGAGTCAGAT 29549 Query 20425 CATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 | |||| ||||||| |||||||| ||||| Sbjct 29548 CCTGGGTTTCAACGAGTGCTTCGAGCCTTACAC 29516 Score = 123 bits (136), Expect = 3e-23 Identities = 268/398 (67%), Gaps = 16/398 (4%) Strand=Plus/Plus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||| |||||||| ||||||| |||| |||||| || || || || ||||| Sbjct 29516 GTGTAAGGCTCGAAGCACTCGTTGAAACCCAGGATCTGACTCGTTGAAGCAGTAGGCATA 29575 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATG--CGTCTTGATCTCGACCTTTAGG---- 78660 || ||||| || || || |||| | || || || | ||||| | | || ||| Sbjct 29576 GGAGCGACAAGGAGCGAGTTCCTGATTCCGTGGACGGC--GATCTTGGCTTTGAGGGAAG 29633 Query 78661 --CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGG 78718 | |||||||| || | | | | ||||||||||| || || ||||| | Sbjct 29634 CCCAGTCCCAAAGGTCGGTAGGAGTAACACCCCACATGTCGTACTGGAGCTGACCCTGCG 29693 Query 78719 ACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA-- 78776 | | || || |||| | | ||| ||| | |||||||| || |||| ||||| || Sbjct 29694 AGACGGGGGATCCCTGGTAGGTCGAGTAGGCTCCCTCCTTCTCAGCGATCTCGCACGAAG 29753 Query 78777 -CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 |||| || || |||||||| | | ||||||||| ||||||||| |||| Sbjct 29754 CCTCG---AGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCT 29810 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || ||||||| | | | || ||||||||| ||||||| || ||||| || |||| Sbjct 29811 CGGGTCCGTCGAAGGGCATTCGAAGGATCATGAAGGCATCGGCGAGTCCCTGCACTCCGA 29870 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCC 78933 |||| |||||||| ||||||||| ||||| ||| Sbjct 29871 CTCCGATGGGTCGGTGTCGCATGTTGGAGTTTCGAGCC 29908 Score = 114 bits (126), Expect = 1e-20 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 79035 GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGA 79094 |||||| || || ||| || ||| |||| |||||| ||||| |||||| || ||| Sbjct 30098 GATGAAGGTGGGGAGGGCCATCGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGAGCAGA 30157 Query 79095 AACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||||| || ||||| | ||||||||||||||||| |||| |||||||||||| Sbjct 30158 GTACTCGATGATCTCCGTGCAGAGGTTAGACGACTTGATGGTTCCGAGGTTCTTCTGGTT 30217 Query 79155 GCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 | ||||| ||| ||||||| ||||| Sbjct 30218 GGACTTCTGGTTGGCGGCGTCC-TGTAG 30244 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT 79730 ||||||||| || || |||||| || |||||||| |||||||| ||||| ||||| Sbjct 31146 CTTGGAGATCATAGCACAAGACTTGAGGGTGTCGTAGATACCCTCGATGGAGTCCTCCTT 31205 Query 79731 CATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 ||| | || |||||||| ||| | ||| |||| ||||||||||||||||| Sbjct 31206 CATGGAAACGAGGAAGCACGACGAGAGCTGAGGGTGAGGAGTACCGGCGTTGAAGAG 31262 >seq712 Length=12724 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || ||||||||||||||||| |||||| | | || ||||||||||| ||||| || Sbjct 6037 CGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGAGG 6096 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || ||||| || || | |||||||||||| |||| || |||||||||| || || Sbjct 6097 ACTAATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGACGAGGGACTTCA 6153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514247754160