Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq141 143 3e-29 seq44 118 1e-21 >seq141 Length=45857 Score = 143 bits (158), Expect = 3e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| ||||| || ||||| || || | ||||| ||||| || | | Sbjct 44536 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 44477 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | ||||| || || |||||||||||||| || ||||| || |||||||| Sbjct 44476 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 44417 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || ||||| ||||| |||||||||| || ||||| | || || || |||| Sbjct 44416 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 44357 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| ||||| ||||| | || | |||||||| || ||| Sbjct 44356 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGGA 44315 >seq44 Length=75583 Score = 118 bits (130), Expect = 1e-21 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 45684 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 45625 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 45624 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 45565 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 ||||| |||||||||| ||| || || | ||||| || |||| ||||| Sbjct 45564 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 45515 Score = 116 bits (128), Expect = 4e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || ||||| || || ||||| || | ||| | || | ||| Sbjct 46113 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACGTCAAG 46054 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 46053 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 45994 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| |||||||||| ||| || || | || || || |||| |||| Sbjct 45993 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 45945 Score = 114 bits (126), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 47286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 47227 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 47226 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 47167 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 |||||||||||||| | || ||||| | || || || |||| ||||| Sbjct 47166 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 47117 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||||| ||||| ||||| |||| || | || | || Sbjct 46504 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAA 46445 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||||||||||||||| |||||||| ||||| ||||| || || || || || Sbjct 46444 GCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGA 46385 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| ||||| |||| || ||||| | ||||| || |||| |||| Sbjct 46384 AAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 46336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570299428653680