Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq141 127 1e-24 seq44 107 1e-18 >seq141 Length=45857 Score = 127 bits (140), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||| | || || | || || Sbjct 44334 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 44393 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | ||| | ||| ||||| ||| Sbjct 44394 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 44453 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||||| || || ||||| Sbjct 44454 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 44513 Query 44309 CCCGTGAGGGTCTTCACGAAGAT 44331 ||||| |||||||| |||||||| Sbjct 44514 CCCGTAAGGGTCTTAACGAAGAT 44536 >seq44 Length=75583 Score = 107 bits (118), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 44143 GCTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201 |||| ||||| |||||||||||||||| ||| || |||| || || ||||| || | Sbjct 47112 GCTCACCTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAG 47171 Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | ||||| | || |||||||| | ||| | |||||||| ||| ||||| ||| | Sbjct 47172 CGAAGATGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGA 47231 Query 44262 ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 47232 CGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGG 47287 Score = 102 bits (112), Expect = 6e-17 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||| ||||||||||| |||| |||| || |||| || |||||||| ||||| || Sbjct 46728 CCTTCTGGATGTTGTAGTCGGACAAAGTT--CGACCGTCCTCGAGCTGCTTTCCGGCGAA 46785 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||||||||||| | ||| | ||| ||||| ||| ||||| ||| | | Sbjct 46786 AATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTT 46845 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||||| ||||| | || || |||||||| || ||| Sbjct 46846 GTCGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAGG 46897 Score = 98.7 bits (108), Expect = 7e-16 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | ||| || | || || |||||||| || || ||| Sbjct 45515 CCTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAG 45574 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 45575 ATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTA 45634 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 45635 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAGG 45685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| | ||| || | || || |||||||| || || |||| Sbjct 45945 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 46004 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 46005 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT 46064 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||| | ||| || || |||| || || |||||||| || ||| Sbjct 46065 CGATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAGG 46114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983647817563