Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F000815965.1_202015-01-07] 1,539 sequences; 28,651,359 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq44 161 2e-34 seq141 154 4e-32 seq233 98.7 2e-15 seq2 95.1 3e-14 >seq44 Length=75583 Score = 161 bits (178), Expect = 2e-34 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 47286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 47227 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| |||||||||||||| || ||||||||||| |||||||| ||| Sbjct 47226 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 47167 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || || ||||| || ||| | || || ||||||| ||| |||| |||| Sbjct 47166 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAG 47118 Score = 149 bits (164), Expect = 2e-30 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| |||||||| || || || || ||||| ||||||||| Sbjct 46504 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAA 46445 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || || || ||||| ||||| || ||||| |||||||||||| Sbjct 46444 GCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGA 46385 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||||||| | || ||| |||| || ||| |||| || Sbjct 46384 AAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAA 46338 Score = 147 bits (162), Expect = 5e-30 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 45684 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 45625 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 45624 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 45565 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || |||||||| ||||| | ||||| | || || ||| |||| |||| Sbjct 45564 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAG 45516 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| || || || || ||| ||||||||||| |||||||| Sbjct 46113 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACGTCAAG 46054 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 46053 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 45994 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| ||||| | ||||| | ||||| ||| |||| || Sbjct 45993 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAA 45947 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| |||||||| ||| || ||||||||||| |||||||| Sbjct 46896 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAAG 46837 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || || |||||||| || ||||| ||| | || ||||||||| Sbjct 46836 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCCGGA 46777 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| || || | ||| | |||| || ||| |||| || Sbjct 46776 AAGCAGCTCGAGGACGGTCGAACTTTGTCCGACTACAACATCCAGAA 46730 >seq141 Length=45857 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || || || || || || |||||| | |||||||| || |||||| Sbjct 44536 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 44477 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| || || |||||||| || ||||| ||| Sbjct 44476 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 44417 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||||||| ||||| |||||||| |||||| | || ||| | ||||| ||| |||| Sbjct 44416 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 44357 Query 178107 AAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || |||| || Sbjct 44356 AAGGAGTCCACCCTTCA-CTTGGTT 44333 >seq233 Length=35643 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| || || ||||| || || ||||| ||||| |||||||||||||| | Sbjct 27136 AGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGC 27077 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||| || ||| | || ||| | ||||| ||| |||| || || || || || || Sbjct 27076 AGCTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCACT 27017 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||| | ||||| || Sbjct 27016 TGGTTCTCCGACTCCGA 27000 >seq2 Length=156898 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 |||||| ||||| ||||| ||| |||| | | |||||| |||||| | ||||||||| Sbjct 74497 GAAAGCAGCGACACTATCGACAACATCAAGAACAGGATTCAAGACAAACAGGGAATCCCT 74556 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 || || || ||||| || |||||||| || | ||| ||||| ||||| | |||||| Sbjct 74557 CCAGATCAACAACGTCTCATCTTCGCAGGGAGACACCTCGAGGATGGCCGAACTCTT 74613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203707464301566