Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 4e-12 seq41 86.0 1e-11 >seq23 Length=420069 Score = 87.8 bits (96), Expect = 4e-12 Identities = 184/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 305091 CATACCCGATCAAAGAAGCT-GAAACATCTAACAAACGGCGACGCCCCATCGGTGTAGGA 305149 || |||| ||| |||||| ||||| || |||| || | || |||||||| || ||| Sbjct 227410 CAGACCCCGTCATCGAAGCTCGAAAC-TCCAACATGCGACACCGACCCATCGGAGTCGGA 227352 Query 305150 GTGCAAGGACTTCAGGATGTGTTCTTCAAACTGAAACTTCCGTTCGACTCACCGGAAGCC 305209 ||||||||||| || | ||| | | || | | || || ||| ||| || ||| Sbjct 227351 GTGCAAGGACTCGCCGACGCCTTCATGATCCTTCGAATGCCCTTTGACGGACCCGAGGCC 227292 Query 305210 AGGGACCTCAACCGCGAAATCTTCGAACATATCTACTACGCCGCCGTAGAAGCGTCGGTA 305269 | | | |||||| | | ||||||||| |||||| ||||||| | || || ||| Sbjct 227291 AAGAAGCTCAACATCCAGATCTTCGAAACCATCTACCACGCCGCTCTCGAGGCTTCGTGC 227232 Query 305270 GAACTTGCAGAAATTCATGGACCCCATCCCACATTCGAAGGTTCTCCCGCGAGCAAAGGT 305329 ||||| || || | | ||| || | | || | | |||| || |||| | | ||| Sbjct 227231 GAACTCGCCGAGAAGGAGGGAGCCTACTCGACCTACCAAGGATCCCCCGTCTCCCAGGGT 227172 Query 305330 ATCCTCCAGTATCACATGTGGGATGTTACCCC 305361 || ||||| ||||||||| |||||| || Sbjct 227171 CAGCTTCAGTACGACATGTGGGGTGTTACGCC 227140 >seq41 Length=199935 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 |||||| | ||||||||||| ||||| ||||| || | | || | || || ||||| Sbjct 182812 CTTATGTGCCAGTACATCGAGTTCGTTGCCGATCGACTCCTCGTCTCCCTCGGAAACGAG 182753 Query 230527 AA--AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 || | || | |||| |||||||| | || |||||| | || ||||| ||||| | Sbjct 182752 AAGCACTGGGGA--TCTACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCCAAGGAA 182695 Query 230585 AGACCAACTTCTTCGAAAAGCGTGT 230609 || ||||||||||||| ||||| || Sbjct 182694 AGGCCAACTTCTTCGAGAAGCGAGT 182670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821980547870