Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq41 129 6e-25 seq34 111 2e-19 seq7 107 2e-18 seq15 95.1 1e-14 >seq41 Length=199935 Score = 129 bits (142), Expect = 6e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||| | | ||| || |||||| ||||| || Sbjct 183316 AAGGCCGATTGGGCTCTCAAGTGGATCTCTTCGAAGGAGTCCTCCTTCGCTGAGCGACTC 183257 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || ||||| ||||||||||| ||||||| || || || || |||| || ||| Sbjct 183256 GTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGATCGTTTGCTTCCATCTTCTGG 183197 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || ||||||||||| || || ||| ||||||| | ||||| ||||| Sbjct 183196 CTCAAGAAGCGAGGACTCATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGAT 183137 Query 117164 GAGGGTCTGCA 117174 |||||||| || Sbjct 183136 GAGGGTCTTCA 183126 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || |||||| |||||| || ||||| ||||| || ||| || |||||||||||||| Sbjct 183726 CACTTCATCTCGCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAAC 183667 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || ||||||| ||| |||||||||| ||| || ||||| || ||||||||||| || Sbjct 183666 CTCCTCGAGCGATTCTCTCAGGAGGTCCAGTCCGCTGAGGCTCGATGCTTCTACGGTTTC 183607 Query 116861 CAGATC 116866 |||||| Sbjct 183606 CAGATC 183601 >seq34 Length=267493 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || || || ||||| || ||||||||| | || || || | | |||| | Sbjct 242429 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 242488 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| ||||| ||||| | || ||||| || Sbjct 242489 ATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAGCG 242547 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 |||||||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 242548 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 242607 Query 40875 GAAGGAGGCCACGCTGCA 40892 ||||||| |||| || || Sbjct 242608 GAAGGAGTCCACCCTTCA 242625 >seq7 Length=945956 Score = 107 bits (118), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||||||| |||| ||||| || |||||| | | | |||| |||| Sbjct 575317 CTCACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAA 575259 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||| ||||| | || |||||||||||||||| ||| || Sbjct 575258 GGCTAAGATCCAAGACAAGGAGGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 575199 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || || || || || | || || || ||| |||||||||||||| Sbjct 575198 AAAGCAACTTGAGGATGGACGAACTCTTTCCGATTACAACATCCAGAA 575151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || |||||||| |||| |||||| | | |||| | | | |||| |||||| Sbjct 574132 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGTCGGACACCATCGACAACG-TCAAGGC 574074 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || ||||| ||||| | |||||||| |||||||| | ||| || || Sbjct 574073 GAAGATCCAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGACTCATTTTCGCCGGAAA 574014 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| || |||| || || ||| || |||||||||||||||| Sbjct 574013 GCAGCTCGAGGACGGTCGAACACTCTCTGATTACAACATCCAGAAGG 573967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || || |||||| |||| ||||| || | || | | | |||| | || Sbjct 573744 CTCACTGGAAAGACGATCACCCTCGAGGTCGAGTCCTCTGATACTATCGACAACG-TGAA 573686 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||| ||||| | || ||||||||| | |||| ||| || Sbjct 573685 GGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAACGATTGATCTTCGCTGG 573626 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || ||||| || || | || |||||| |||||||||||||||||| Sbjct 573625 AAAGCAGCTCGAGGATGGACGAACCCTCTCCGACTACAACATCCAGAA 573578 Score = 89.7 bits (98), Expect = 5e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || ||||||||| | || ||||| || |||||| | | |||| |||| Sbjct 574537 CTTACCGGAAAGACCATCACCCTGGAAGTCGAGTCCTCCGACACGATCGATAACG-TCAA 574479 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || |||| ||||| ||||| ||||| | || || || |||||||||| ||| || Sbjct 574478 AGCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCCGG 574419 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || ||||| || || | || || ||| ||||||||||| ||||| Sbjct 574418 GAAGCAGCTTGAGGATGGTCGAACTCTCTCGGACTACAACATTCAGAA 574371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || |||||||| |||| || ||| | |||||| | | |||| |||| Sbjct 574926 CTCACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACGATCGACAACG-TCAA 574868 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 574867 AGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGATCTTCGCCGG 574808 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || || | |||||||||||||||||||| Sbjct 574807 AAAGCAGCTCGAGGACGGTCGAACGTTGTCCGACTACAACATCCAGAAGG 574758 >seq15 Length=705085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | |||||||| |||||||||| ||| || || ||||| || Sbjct 440381 GACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAG 440322 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || ||||| || |||||||||||||||||| | || || || Sbjct 440321 GACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCGACCCTTCA 440272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218240404240