Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq34 118 9e-22 seq7 111 1e-19 seq15 98.7 9e-16 >seq34 Length=267493 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||||||||| | || || ||||||| Sbjct 242631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 242572 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| ||||||| ||||||||||| ||||| || ||||||||||| Sbjct 242571 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGG 242512 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||| ||||| | ||| | || || Sbjct 242511 ATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 242452 Query 118710 CCGGTCAGAGTTTTTACAAAAATCT 118734 || || || || || || || |||| Sbjct 242451 CCCGTAAGGGTCTTAACGAAGATCT 242427 >seq7 Length=945956 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||||||| | ||| || |||||| || || ||||||||| ||| Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| || |||||||| ||||| || |||||||||||| || || || || | | Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| |||||| | | ||||||||||| ||| | || || ||||| || Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||| || | ||| || |||||| ||||| || || ||| ||| Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| ||||| || ||||||||||| ||| || ||| || | | Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| ||||| | | |||||| || | ||| | || || ||||| || Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| ||| | || || |||||||||||| ||||||||| ||| Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | || |||||||| ||||| || ||||||||||| || || || || | | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| || || | | ||||||||||| ||| | ||| || || || || Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || ||||||||||| | || || ||||||||||| ||||| ||| | ||| Sbjct 573969 TTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATG 574028 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| |||||||| || |||||||| || || || || || | ||| Sbjct 574029 AGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCG 574088 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 | |||||||| |||||||||| || | || || ||||||| Sbjct 574089 ATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCA 574134 >seq15 Length=705085 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || || || | |||||||| | || ||||| || || ||||||||||| Sbjct 440246 TACCTCCTCGCAACCTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 440305 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||||| ||||| ||| ||||||| |||||||| || || | Sbjct 440306 AAAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGG 440365 Query 118630 GTATGCCCTCCTTGTCT 118646 | || |||||||||||| Sbjct 440366 GGATACCCTCCTTGTCT 440382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829612191108