Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq34 111 2e-19 seq7 100 3e-16 >seq34 Length=267493 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||| | ||||| || | ||| |||||| || || |||||||| | Sbjct 242650 TCCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 242591 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| |||||||| |||||||||||||| || | || Sbjct 242590 AAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGG 242531 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| || |||| ||| | | | ||||| || |||| Sbjct 242530 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCA 242472 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 43177 | || | |||||||| || ||||| || ||||| || ||||| Sbjct 242471 CCTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGAT 242429 >seq7 Length=945956 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || |||||||||| || || || |||| || |||||||| || ||||| | Sbjct 573967 CCTTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 574026 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 |||||||||||||||||| || | | |||||| ||| ||| || |||| ||| | Sbjct 574027 TGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGA-CGTTG 574085 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | ||||| |||||| || |||| ||||||||| || || || Sbjct 574086 TCGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 574132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 574758 CCTTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGA 574817 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | | |||||| ||| ||| || ||||| ||| | Sbjct 574818 TCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGA-CGTTG 574876 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | ||||||| |||||| || |||| |||||||| || || || || Sbjct 574877 TCGATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 42989 GCTCTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAG 43047 |||| ||||| ||||| ||||| || | ||||| || | || || |||||||| || | Sbjct 574363 GCTCACCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGG 574422 Query 43048 CGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTG 43106 |||| ||||||||||| || || | || | | |||||||||| ||| | || | |||| Sbjct 574423 CGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGCTTTG 574481 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | | ||||||| || || || || | |||||||| || || || || Sbjct 574482 ACGTTATCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816534989720