Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq41 104 2e-17 seq23 87.8 2e-12 >seq41 Length=199935 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 ||||| ||| | || |||| ||||| |||||||| || || ||||| || || ||| Sbjct 183271 TTCGCTGAGCGACTCGTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGATCGTTT 183212 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| | ||||| || || || |||||||| || ||||| ||||||| Sbjct 183211 GCTTCCATCTTCTGGCTCAAGAAGCGAGGACTCATGCCCGGACTTACGTTCTCCAACGAG 183152 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 ||||| ||| | || |||||||| || || |||| || Sbjct 183151 TTGATCTCGAGGGATGAGGGTCTTCACACCGATTGTG 183115 >seq23 Length=420069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| ||||||||||| || || || || || |||||| || ||| Sbjct 228124 AAGAGATCAGGGATCCAGAGAGCGTAGAAGAGATCTCGAGCTCGAGACTCCTCCTTTCCG 228183 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||||| | | |||| ||||| || | |||||||||||| ||||||||||| Sbjct 228184 TGGTTCTTCCTGAGGTCCAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTA 228239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765569760080