Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 seq34 107 4e-18 >seq7 Length=945956 Score = 116 bits (128), Expect = 9e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || ||||| || ||||||| ||| || || || || || || || || | Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||||||||||||||| ||||| || || ||||||||||| ||||| || || | Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | | || ||| | || || || || || || ||||| || ||||| Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || || || || ||||||| || || || ||||| |||||||| || | Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | || ||||||||||| ||||| || || || || ||||| || || || || | Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | | ||| ||| | || ||||| || || || ||||| || || || Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||| || || |||| || || || || || |||||||| || | Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | || ||||||||||| ||||| || || ||||| ||||| || || || || | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | | ||||| | || ||||| || || || ||||| ||||| || Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 >seq34 Length=267493 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| || | ||| || | || | || || || ||||| || || || || || Sbjct 242650 TCCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 242591 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||| || || || || || |||||||| || || || | ||| ||||||||||| Sbjct 242590 AAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGG 242531 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||| || || ||||| ||||| || || || || || | ||| || || || || Sbjct 242530 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 242471 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | || || ||||| || ||||| || || || || |||| Sbjct 242470 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 242427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396201908492