Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 125 1e-23 seq41 104 4e-17 >seq23 Length=420069 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| ||| | |||| | ||||||| || | |||||||| |||| Sbjct 227149 CCCCACATGTCGTACTGAAGCTGACCCTGGGAGACGGGGGATCCTTGGTAGGTCGAGTAG 227208 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | || || || ||| || | || | ||||| ||||||| ||||||||| ||| Sbjct 227209 GCTCCCTCCTTCTCGGCGAGTTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTTTCG 227268 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| |||| | | ||||| | | | ||||| || | | |||||| Sbjct 227269 AAGATCTGGATGTTGAGCTTCTTGGCCTCGGGTCCGTCAAAGGGCATTCGAAGGATCATG 227328 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| ||||||| ||||| ||||| |||| |||||||||| ||||||| |||||||| Sbjct 227329 AAGGCGTCGGCGAGTCCTTGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAG 227385 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| |||||||||||| ||||| || | || ||||| || ||||| |||||||| Sbjct 227607 GGCCAAGTTGCAGACGGCGACCTCGTCGGGAGCGGAGTACTCGATGATCTCAGTGCAGAG 227666 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||| |||||||||| || |||| || || |||||||| |||| |||||||| Sbjct 227667 GTTCGACGACTTGATGGTTCCGAGGTTCTTCTGGTTGGACTTCTGGTTGGCGGCGTCCT 227725 >seq41 Length=199935 Score = 104 bits (114), Expect = 4e-17 Identities = 144/199 (72%), Gaps = 16/199 (8%) Strand=Plus/Minus Query 42648 AAGGCGGACTGGGCGCTCAACTGGATC-----GA--GAGTCCCGACGCAACGTTCGGCGA 42700 ||||| || ||||| ||||| |||||| || |||||| | |||| || Sbjct 183316 AAGGCCGATTGGGCTCTCAAGTGGATCTCTTCGAAGGAGTCCT-------CCTTCGCTGA 183264 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | || || || || | ||||||||||| ||||||||||| || | || || ||||| Sbjct 183263 GCGACTCGTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGATCGTTTGCTTCCAT 183204 Query 42761 CTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || ||| || ||||||||||| || ||||| ||||| | ||| Sbjct 183203 CTTCTGGCTCAAGAAGCGAGGACTC-ATGCCCGGACTTACGTTCTCCAACGAGTTGATCT 183145 Query 42820 GCAGGGACGAGGGGCTGCA 42838 ||||| ||||| || || Sbjct 183144 CGAGGGATGAGGGTCTTCA 183126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337441168240