Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 >seq7 Length=945956 Score = 116 bits (128), Expect = 9e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||||| ||| || ||||| || || | || ||||| ||||||| Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| || || ||| | |||||||| || || |||||||| || || |||||||| | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 | |||| ||| || || || ||||| ||||||||||| || || || Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| | ||| || ||||| || | || ||||| ||||||||| Sbjct 574760 TTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATC 574819 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || | ||||| || || ||||||||||| || ||||| ||||| || Sbjct 574820 AATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGACGTTGTCG 574879 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || | ||| |||||| || ||||| ||||| ||||| ||||| ||| Sbjct 574880 ATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAGA 574927 Score = 105 bits (116), Expect = 2e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || || || | ||| || || ||||| || | || ||||| ||||| || Sbjct 573969 TTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATG 574028 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || |||||||| || ||||||||||| ||||| || ||||| || Sbjct 574029 AGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCG 574088 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || | || |||||| || ||||||||||| ||||| ||||||| Sbjct 574089 ATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCA 574134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652147966022