Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq34 129 1e-24 seq7 102 2e-16 seq15 98.7 2e-15 >seq34 Length=267493 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || |||||||| |||| |||||| || | | || Sbjct 242644 TCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGT 242585 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||| || ||||||||||| ||||||||||| |||||||| || ||| ||||| Sbjct 242584 TCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCC 242525 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| |||||| | | || || ||||| Sbjct 242524 CTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAA 242465 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| ||||| || || || || || || Sbjct 242464 GGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGAT 242429 >seq7 Length=945956 Score = 102 bits (112), Expect = 2e-16 Identities = 128/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 199434 TCGACTC---CTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTC 199490 ||||||| ||| |||| |||||| |||| | || | || || || |||||||||| Sbjct 573958 TCGACTCACCCTTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTC 574017 Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCT 199550 ||||||| ||||| ||||||||||| ||| ||||| || ||||| ||||| || Sbjct 574018 CGGCGAAAATGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCT 574077 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||| |||| |||||| | | ||| || || | |||||| ||||| || || Sbjct 574078 TGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 574132 Score = 96.9 bits (106), Expect = 8e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199429 GAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTT 199488 ||| | ||| |||| |||| ||||||||| | ||| || | || || || |||||||| Sbjct 574747 GAGCGACGAACCCTTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTT 574806 Query 199489 TCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTG 199548 |||||||||||| | ||||||||||| ||| || || || ||||| ||||| Sbjct 574807 TCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGC 574866 Query 199549 CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 || ||| |||| ||||| | | ||| || || | ||||| ||||| || ||||| Sbjct 574867 TTTGACGTTGTCGATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Query 199609 A 199609 | Sbjct 574927 A 574927 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | | || | |||||| || ||||||||||| |||||| Sbjct 573575 CCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAG 573634 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | || ||||| || ||| ||||| || ||||| ||||| ||||||| Sbjct 573635 ATCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG 573694 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 |||| || || | | || || || | ||||||||||| || ||||| Sbjct 573695 TCGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | ||||||||| | | ||| | ||||| || |||||||| ||||||||| Sbjct 574368 CCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAG 574427 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| ||||| || || ||| ||||| || ||||||||||| || ||| Sbjct 574428 ATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTA 574487 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 |||| ||||| | | || || |||| ||||| ||||| || || || Sbjct 574488 TCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||| || | | ||| | |||||| || || |||||||| |||||| Sbjct 575148 CCTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAG 575207 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| || ||||| || ||| ||||| || || || ||||| ||| ||| Sbjct 575208 ATGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTG 575267 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 |||| |||||| | | || || || | ||||| ||||| || ||||| Sbjct 575268 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 >seq15 Length=705085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | ||| || ||||||||||| |||| |||||| || | | || | ||| Sbjct 440260 CTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCG 440319 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || ||||||||||||||||||||||| ||||||||||| || Sbjct 440320 TCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGG 440363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919349364983