Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq34 105 8e-18 >seq7 Length=945956 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | || || |||| ||||||||||| |||||||| | Sbjct 574758 CCTTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGA 574817 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | | |||||| ||| |||||| |||| ||| | Sbjct 574818 TCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGA-CGTTG 574876 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | ||||||| |||||| || || | |||||||| || || || || Sbjct 574877 TCGATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Score = 109 bits (120), Expect = 6e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || || || |||| ||||||||||| |||||||| | Sbjct 573967 CCTTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 574026 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||||| || | | |||||| ||| ||||||| ||||| ||| | Sbjct 574027 TGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGA-CGTTG 574085 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | ||||| |||||| || || | ||||||||| || || |||| Sbjct 574086 TCGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCA 574134 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || | || ||||||||||| || ||||| Sbjct 573575 CCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAG 573634 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||||| || ||||| || | || | | |||||||||| |||||| Sbjct 573635 ATCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTT 573681 >seq34 Length=267493 Score = 105 bits (116), Expect = 8e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || || || | || ||||||||||| || ||||| Sbjct 242614 CTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAA 242555 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 242554 GATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGT 242496 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| |||||||| || ||||| || || |||| Sbjct 242495 TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAA 242436 Query 46581 CAAAGAT 46587 | ||||| Sbjct 242435 CGAAGAT 242429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237347243480