Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq41 105 7e-18 seq34 100 3e-16 seq15 91.5 1e-13 seq7 87.8 2e-12 >seq41 Length=199935 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 ||||| ||||| || || | |||||| ||| || | ||||||||||| || || || Sbjct 183132 CCCTCATCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATGAGTCCTCGCTTC 183191 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| || || || || ||||||| ||||||||||| |||||| Sbjct 183192 TTGAGCCAGAAGATGGAAGCAAACGATCCGGAGAAGAAGATTCCCTCGACGGCAGCGAAA 183251 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || || || ||||| |||| | || || || | |||||| || ||||| ||| Sbjct 183252 GCGACGAGTCGCTCAGCGAAGGAGGACTCCTTCGAAGAGATCCACTTGAGAGCCCAATCG 183311 Query 133096 GCCTTT 133101 |||||| Sbjct 183312 GCCTTT 183317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| ||||| || ||||| | ||| || || |||| ||| ||||| Sbjct 183601 GATCTGGAAACCGTAGAAGCATCGAGCCTCAGCGGACTGGACCTCCTGAGAGAATCGCTC 183660 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 || || || ||||||||||| || ||| || ||||| ||||| || |||||| ||| Sbjct 183661 GAGGAGGTTCTCGTTGACGATACCATCGGAAGCAGCGAAGAAGGCGAGGACGTGCGAGAT 183720 Query 133338 GAAATG 133343 ||| || Sbjct 183721 GAAGTG 183726 >seq34 Length=267493 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||| || || || ||||| || ||||||||| | || || ||| | | |||| | Sbjct 242429 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 242488 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || | || |||| ||||| |||||||| || | || || ||||| Sbjct 242489 ATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAGCG 242547 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 242548 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 242607 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || || || ||||| || ||| | |||| || Sbjct 242608 GAAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGG 242649 >seq15 Length=705085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| ||||| || ||| | ||||| ||||| ||||| | ||| || || ||| Sbjct 440387 ATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTCATCTTCGCCGGAAAGCAG 440328 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || |||| || ||||| || ||||||||||| ||||| |||| || || ||| Sbjct 440327 CTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTG 440268 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 || || | ||| |||| || Sbjct 440267 GTCCTCAGGTTGCGAGGAGG 440248 >seq7 Length=945956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || |||||||| |||| ||||| | | |||| | | | |||| | || | Sbjct 574132 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGTCGGACACCATCGACAACG-TCAAGGC 574074 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| || || |||||||| || ||||||| ||||| ||||||| ||| || || Sbjct 574073 GAAGATCCAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGACTCATTTTCGCCGGAAA 574014 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| || |||| || || ||| || ||||||||||| |||| Sbjct 574013 GCAGCTCGAGGACGGTCGAACACTCTCTGATTACAACATCCAGAAGG 573967 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || || ||||||||| | || |||||| || |||||| | | |||| | || Sbjct 574537 CTTACCGGAAAGACCATCACCCTGGAAGTCGAGTCCTCCGACACGATCGATAACG-TCAA 574479 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | ||||| |||||||| || | || |||||||| ||||| | ||| || Sbjct 574478 AGCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCCGG 574419 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || ||||| || || | || || ||| ||||||||||| || ||||| Sbjct 574418 GAAGCAGCTTGAGGATGGTCGAACTCTCTCGGACTACAACATTCAGAAAGG 574368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||||||| |||| |||||| || |||||| | | | |||| | || Sbjct 575317 CTCACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAA 575259 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| |||||||| || | || || || || ||||| | ||| || Sbjct 575258 GGCTAAGATCCAAGACAAGGAGGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 575199 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || || || || || | || || || ||| ||||||||||| ||||| Sbjct 575198 AAAGCAACTTGAGGATGGACGAACTCTTTCCGATTACAACATCCAGAAAGG 575148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171868428160