Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq34 111 1e-19 seq15 102 5e-17 seq7 93.3 3e-14 >seq34 Length=267493 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| || ||||||||| ||||| |||| || Sbjct 242632 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTC 242573 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || ||||| ||||| || | || | ||||||||||| Sbjct 242572 GAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTG 242513 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||| ||||| | | ||||| | ||| | ||| || || | ||| |||| Sbjct 242512 GATCTTAGCCTTGAC----GTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGG 242457 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 | || ||||| || ||||| || ||||||| Sbjct 242456 TCTTCCCCGTAAGGGTCTTAACGAAGATCT 242427 >seq15 Length=705085 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | |||||| | |||||||||| || || ||||| ||||| || |||||| Sbjct 440248 CCTCCTCGCAACCTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 440307 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||||| | || || ||||| |||||||| || || ||||| |||||||| | || Sbjct 440308 AGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 440367 Query 34875 ACCCCCTCCTTGTC 34888 | ||||||||||| Sbjct 440368 ATACCCTCCTTGTC 440381 >seq7 Length=945956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| |||||||| || |||| |||| || ||||| || ||||| || | Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| || || || | || | ||||||||||| |||||| ||||||| Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 | |||| || || ||| || || | ||| ||||| ||||| || || Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||||| ||||| || ||| ||||| |||| || ||||| ||||| || || | Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||||||||| || | || | ||||||||||| ||||| || ||| Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 | || | ||| || ||| || |||| ||| || || ||||| ||||| Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||||| || || ||||| ||||| |||| || || || ||||| || || | Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||||||||| || | || | ||||||||||| ||||| |||||| Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 | || | || || ||| || |||| ||| ||||| ||||| ||||| Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633010485672