Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 111 3e-19 seq41 84.2 4e-11 >seq23 Length=420069 Score = 111 bits (122), Expect = 3e-19 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 213119 CCACATGTCAAACTGCAAGATG-CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGG 213177 ||||||||| |||| ||| || || | | |||||| || ||||| | ||||||| Sbjct 227151 CCACATGTCGTACTG-AAGCTGACCCTGGGAGACGGGGGATCCTTGGTAGGTCGAGTAGG 227209 Query 213178 GGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAA 213237 || | || || ||| || ||||| || |||| || || |||| |||||||||||| | Sbjct 227210 CTCCCTCCTTCTCGGCGAGTTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTTTCGA 227269 Query 213238 ATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGT-GAAGGGCATCATCATGCGTTGG 213296 | |||| ||||||||||||||||||| ||| ||| |||||||| | | | Sbjct 227270 AGATCTGGATGTTGAGCTTCTTGGCCTC-GGGTCCGTCAAAGGGCATTCGAAGGATCATG 227328 Query 213297 AACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT 213355 || | || || || || || || |||| |||||||||| ||||| || ||| || || Sbjct 227329 AAGGCGTCGGCGAGTCCTTGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAGTT 227387 >seq41 Length=199935 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 48166 GATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||| | | |||||||||| || || ||||||| || | || ||||||||||| || Sbjct 183146 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATGAGTCCTCGCTTCTTGAGCCAGAAGAT 183205 Query 48226 TGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTC 48285 | || || || || ||||||||||| ||||| || || ||||| ||| ||| | ||| Sbjct 183206 GGAAGCAAACGATCCGGAGAAGAAGATTCCCTCGACGGCAGCGAAAGCGACGAGTCGCTC 183265 Query 48286 TCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 |||| || | | ||| |||||||| || ||||| || ||||| Sbjct 183266 AGCGAAGGAGGACTCCTTCGAAGAGATCCACTTGAGAGCCCAATCGGCCTT 183316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531065020160