Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7 152 7e-32 seq29 89.7 7e-13 seq2 86.0 8e-12 >seq7 Length=945956 Score = 152 bits (168), Expect = 7e-32 Identities = 137/171 (80%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| ||||| || |||||||| || || ||||| || ||||| ||||||||| |||| Sbjct 574538 CCTTACCGGAAAGACCATCACCCTGGAAGTCGAGTCCTCCGACACGATCGATAACGTCAA 574479 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||||||| || ||||| || || || || ||||| || ||||| || || || || Sbjct 574478 AGCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCCGG 574419 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || |||||||| ||||| || || ||| | || |||||| |||| ||||| Sbjct 574418 GAAGCAGCTTGAGGATGGTCGAACTCTCTCGGACTACAACATTCAGAAAGG 574368 Score = 152 bits (168), Expect = 7e-32 Identities = 137/171 (80%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || ||||| || |||||||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 575318 CCTCACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACGTCAA 575259 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| ||||| ||||| || || || || |||||||||||||| || || ||||| Sbjct 575258 GGCTAAGATCCAAGACAAGGAGGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 575199 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || || ||||| |||||||| || || | ||||||||| | || ||||| Sbjct 575198 AAAGCAACTTGAGGATGGACGAACTCTTTCCGATTACAACATCCAGAAAGG 575148 Score = 147 bits (162), Expect = 3e-30 Identities = 136/171 (80%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| |||||||| || |||||||||||||| ||||| || || || ||||| ||| | || Sbjct 573745 CCTCACTGGAAAGACGATCACCCTCGAGGTCGAGTCCTCTGATACTATCGACAACGTGAA 573686 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || || ||||| || || || || |||||||||||| | || || ||||| Sbjct 573685 GGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAACGATTGATCTTCGCTGG 573626 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || ||||| || |||||||| |||||| | || |||||| | || ||||| Sbjct 573625 AAAGCAGCTCGAGGATGGACGAACCCTCTCCGACTACAACATCCAGAAAGG 573575 Score = 141 bits (156), Expect = 1e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || ||||| || ||||| |||||||| || ||||| ||||| ||||| ||| |||| || Sbjct 574132 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGTCGGACACCATCGACAACGTCAAGGCG 574073 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || |||||||| || || || ||||| ||||| ||||| ||||| || || || Sbjct 574072 AAGATCCAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGACTCATTTTCGCCGGAAAG 574013 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 ||||| || || || || || ||| ||||||||||| | || |||| Sbjct 574012 CAGCTCGAGGACGGTCGAACACTCTCTGATTACAACATCCAGAAGG 573967 Score = 125 bits (138), Expect = 9e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || ||||| || ||||| ||||||||||| ||||| ||||| ||||| ||| ||||| Sbjct 574926 CTCACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACGATCGACAACGTCAAA 574867 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||| || |||||||| || || || || || ||||| ||| | || || || || Sbjct 574866 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGATCTTCGCCGGA 574807 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || ||||| || || || || || | | || |||||| | || |||| Sbjct 574806 AAGCAGCTCGAGGACGGTCGAACGTTGTCCGACTACAACATCCAGAAGG 574758 >seq29 Length=335673 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| |||||||| || ||||| || ||||||||||| || || ||| || ||| Sbjct 175923 AACGACCAGGGAAACCGAACCACTCCTTCCTACGTTGCCTTCACCGACTCTGAGCGACTC 175982 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | ||||| || || || || ||| || |||||||||| ||| | |||| ||||| Sbjct 175983 ATCGGAGACGCGGCCAAGAACCAGGTCGCCATGAACCCTACCAACTCGATCTTCGACGCT 176042 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| | || || | ||||| ||| | ||||| ||| || ||| ||||| Sbjct 176043 AAGCGATTGATCGGAAGGAAGTTCGAGGACGCCGAGGTCCAGTCCGACATGAAGCACTGG 176102 Query 195554 TCTT 195557 ||| Sbjct 176103 CCTT 176106 >seq2 Length=1337103 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 196039 AGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAA 196098 ||| || || ||||| ||| | || || || || || | || || || ||||| ||||| Sbjct 460641 AGACATGTCCGGAAACCCTCGAGCCCTCCGACGACTCCGAACCGCCTGCGAACGAGCCAA 460700 Query 196099 ACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAAT 196158 |||||| ||||| || | || ||||| | | | ||||| || || | || |||||||| Sbjct 460701 ACGAACCCTCTCCTCCGCCGCCCAAACCACGCTCGAGATCGACTCCCTCTTCGACGGAAT 460760 Query 196159 TGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTT 196200 |||||||| || | | ||||| || | || || ||||| Sbjct 460761 CGACTTCTACACCTCCCTCACCCGAGCGAGGTTCGAGGAGTT 460802 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 196049 GGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC 196108 ||||| | | | || || || || ||| | || || || ||||| ||||||||||| ||| Sbjct 468618 GGAAACCTTCGAGCCCTCCGACGACTTCGAACCGCCTGCGAACGAGCCAAACGAACCCTC 468677 Query 196109 TCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTAT 196168 || || || |||||||| | | | ||||| || || | || |||||||| |||||||| Sbjct 468678 TCCTCCACCGCTCAAACCACGCTCGAGATCGACTCCCTCTTCGACGGAATCGACTTCTAC 468737 Query 196169 AC 196170 || Sbjct 468738 AC 468739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861174731280