Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq41 102 1e-15 seq1 98.7 1e-14 seq23 96.9 4e-14 >seq41 Length=199935 Score = 102 bits (112), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||| ||| |||||| ||||||| ||| || | ||||||||||| |||||| | ||| Sbjct 182669 CACTCGCTTCTCGAAGAAGTTGGCCTTTCCTTGGAGCGAGATCATCTCCATGAAGTCGAA 182728 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 ||||||| | ||||||| ||| |||||| || |||| || || ||||| || Sbjct 182729 GGGGTTGGTAGATCCCCAGTGCTTCTCGTTTCCGAGGGAGACGAGGAGTCGATCGGCAAC 182788 Query 868828 AAACTCGATGTACTGGCACATGAG 868851 |||||||||||||||||||| || Sbjct 182789 GAACTCGATGTACTGGCACATAAG 182812 Score = 102 bits (112), Expect = 1e-15 Identities = 131/176 (74%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| || | || ||||||||||| || |||||||||||||| ||||| Sbjct 183146 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATGAGTCCTCGCTTCTTGAGCCAGAAGAT 183205 Query 869254 GG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCT 869312 || ||| || || ||||| ||||| ||||||||||| || || ||| ||| |||| Sbjct 183206 GGAAGCA-AACGATCCGGAGAAGAAGATTCCCTCGACGGCAGCGAAAGCGACGAGTCGCT 183264 Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTT 869368 | || |||| | || || || | ||||||||| | ||||| ||||||||| Sbjct 183265 CAGCGAAGGAG--GACTCCTTCGAAG-AGATCCACTTGAGAGCCCAATCGGCCTTT 183317 >seq1 Length=1604556 Score = 98.7 bits (108), Expect = 1e-14 Identities = 82/99 (83%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 19098 CTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATC 19157 ||||| ||||| ||||| |||||| ||||||| | ||||||||||||||||| || || Sbjct 1061859 CTCGGGGAGCCCTGCTTCGACAAGCTCGAGGCTACTCTCGCCCACGCCATGCTCTCTATT 1061800 Query 19158 CCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTGCG 19196 || |||||||||| ||||||||||| | | ||||| || Sbjct 1061799 CCCTCCACCAAGGGTTTCGAGATTGG-ATCTGGTTTCCG 1061762 >seq23 Length=420069 Score = 96.9 bits (106), Expect = 4e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1630200 CTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTT 1630259 ||| ||||| | |||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 228612 CTTCGAGATCATGGCGCACGACTTGAGGGTGTCGTAGATTCCCTCGATCGAGTCCTCCTT 228671 Query 1630260 CATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGC 1630317 |||| || || ||||||||||| || ||||| | || || |||||||||||| Sbjct 228672 CATGGAGACAAGGAAGCACGACGAAAGCTGAGGGTGAGGAGTTCCAGCGTTGAAGAGC 228729 Score = 89.7 bits (98), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 ||||| ||| |||| || ||||| ||||| || || || || ||||||||| ||| Sbjct 228124 AAGAGATCAGGGATCCAGAGAGCGTAGAAGAGATCTCGAGCTCGAGACTCCTCCTTTCCG 228183 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAG 1628568 |||||||| ||||||| || |||||| ||||| || ||||| ||||| |||||| Sbjct 228184 TGGTTCTTCCTGAGGTCCAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTAG 228240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126972362233