Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq41 96.9 5e-14 seq48 89.7 8e-12 seq13 89.7 8e-12 >seq41 Length=199935 Score = 96.9 bits (106), Expect = 5e-14 Identities = 128/177 (72%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||||| |||||| || || ||||||||||| || |||||||||||||| ||||| Sbjct 183146 GATCAACTCGTTGGAGAACGTAAGTCCGGGCATGAGTCCTCGCTTCTTGAGCCAGAAGAT 183205 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || | || || ||||| ||||| ||||||||||| || || ||||||| ||||| Sbjct 183206 GGAAGCAAACGATCCGGAGAAGAAGATTCCCTCGACGGCAGCGAAAGCGACGAGTCGCTC 183265 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCCACTCTGCCTTT 794529 || || | ||| | ||| | ||||||||| | ||||| || |||||| Sbjct 183266 AGCGAAGG-----AGGACTCCTTCGAAGAGATCCACTTGAGAGCCCAATCGGCCTTT 183317 Score = 93.3 bits (102), Expect = 7e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||| ||| |||||| ||||||| ||| || | ||||||||||| |||||| | ||| Sbjct 182669 CACTCGCTTCTCGAAGAAGTTGGCCTTTCCTTGGAGCGAGATCATCTCCATGAAGTCGAA 182728 Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035 ||||||| | ||||||||||| ||||| || | || || || ||||| || Sbjct 182729 GGGGTTGGTAGATCCCCAGTGCTTCTCGTTTCCGAGGGAGACGAGGAGTCGATCGGCAAC 182788 Query 794036 GAATTCAATGTACTGGCACATGAG 794059 ||| || |||||||||||||| || Sbjct 182789 GAACTCGATGTACTGGCACATAAG 182812 >seq48 Length=146878 Score = 89.7 bits (98), Expect = 8e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1485499 GAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCG 1485558 |||| |||||| ||| || || ||| | | ||| || || ||||||||||||||||| Sbjct 18386 GAGATAGCGTGCTTGGAAAGCTCTCCGGGGAGGATGAGTCGGACGGCGGTCTGGATCTCC 18327 Query 1485559 CGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATG 1485618 | || | ||| || |||||| | || || | ||||||| |||| Sbjct 18326 CTGGAGGAGATGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAAGCCTCGGAAGCGATT 18267 Query 1485619 CGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCC 1485678 || |||| || |||||||| || ||||| | ||| ||||| | ||||||||||| || Sbjct 18266 CGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATGGACATGGCCTTGTTGGAGATWCCA 18207 Query 1485679 ACGTCGGGGTGCACCTG 1485695 ||||||||| ||||| Sbjct 18206 GTGTCGGGGTGGACCTG 18190 >seq13 Length=740194 Score = 89.7 bits (98), Expect = 8e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1485499 GAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCG 1485558 |||| |||||| ||| || || ||| | | ||| || || ||||||||||||||||| Sbjct 141719 GAGATAGCGTGCTTGGAAAGCTCTCCGGGGAGGATGAGTCGGACGGCGGTCTGGATCTCC 141778 Query 1485559 CGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATG 1485618 | || | ||| || |||||| | || || | ||||||| |||| Sbjct 141779 CTGGAGGAGATGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAAGCCTCGGAAGCGATT 141838 Query 1485619 CGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCC 1485678 || |||| || |||||||| || ||||| | ||| ||||| | ||||||||||| || Sbjct 141839 CGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATGGACATGGCCTTGTTGGAGATACCA 141898 Query 1485679 ACGTCGGGGTGCACCTG 1485695 ||||||||| ||||| Sbjct 141899 GTGTCGGGGTGGACCTG 141915 Score = 89.7 bits (98), Expect = 8e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1485499 GAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCG 1485558 |||| |||||| ||| || || ||| | | ||| || || ||||||||||||||||| Sbjct 313613 GAGATAGCGTGCTTGGAAAGCTCTCCGGGGAGGATGAGTCGGACGGCGGTCTGGATCTCC 313554 Query 1485559 CGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATG 1485618 | || | ||| || |||||| | || || | ||||||| |||| Sbjct 313553 CTGGAGGAGATGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAAGCCTCGGAAGCGATT 313494 Query 1485619 CGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCC 1485678 || |||| || |||||||| || ||||| | ||| ||||| | ||||||||||| || Sbjct 313493 CGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATGGACATGGCCTTGTTGGAGATWCCA 313434 Query 1485679 ACGTCGGGGTGCACCTG 1485695 ||||||||| ||||| Sbjct 313433 GTGTCGGGGTGGACCTG 313417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230550190411