Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq34 123 2e-23 seq15 116 2e-21 seq7 102 5e-17 >seq34 Length=267493 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||||||| ||||| || ||||| ||| | || |||| Sbjct 242634 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCC 242575 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| ||||| ||||| || | || | ||||||||||| Sbjct 242574 TCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCC 242515 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| |||||| Sbjct 242514 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTC 242455 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCT 34973 || ||||| |||||||| || ||||||| Sbjct 242454 TTCCCCGTAAGGGTCTTAACGAAGATCT 242427 >seq15 Length=705085 Score = 116 bits (128), Expect = 2e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | |||||| ||||||| ||||| ||| ||||||||| ||||| || ||||| Sbjct 440248 CCTCCTCGCAACCTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 440307 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || | || || || ||||||||||||||||| ||||| |||||||| | || Sbjct 440308 AGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 440367 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 440368 ATACCCTCCTTGTC 440381 >seq7 Length=945956 Score = 102 bits (112), Expect = 5e-17 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 34783 GCTCTCCTT-CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841 |||| |||| ||||||||| |||||||| || | || |||| || || ||||| |||| Sbjct 574363 GCTCACCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGG 574422 Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901 ||||||| ||||| || || || | || | ||||||||||| | || || ||||| Sbjct 574423 CGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGA 574482 Query 34902 CGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || | |||| || || |||||| || | ||| ||||||||||| || ||| Sbjct 574483 CGTTATCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAGG 574538 Score = 98.7 bits (108), Expect = 6e-16 Identities = 128/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 34783 GCTCTCCTT-CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841 |||| |||| ||| ||||| || || || || | || |||| || ||||||||||| | Sbjct 575143 GCTCACCTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAG 575202 Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901 ||||||| ||||||||||| || | || | ||||||||||| | || || |||| Sbjct 575203 CGAAGATGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGA 575262 Query 34902 CGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || | || | || || |||||| || | ||| ||||||||||| |||||| Sbjct 575263 CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGG 575318 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| ||||| || ||| | || |||| || || |||||||| ||||||||| Sbjct 573578 TTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATC 573637 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||||||| || | || | ||||||||||| | || || || ||| | Sbjct 573638 AATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCG 573697 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || | ||| || |||||| || | ||| || |||||||| |||||| Sbjct 573698 ATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAGG 573745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692208562231