Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq34 111 2e-19 seq7 100 3e-16 seq15 82.4 7e-11 >seq34 Length=267493 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || |||||||| | || | | | |||||||| Sbjct 242628 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCA-TCCTCGAG 242570 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| |||||||| || |||||||| || |||||||| ||| Sbjct 242569 CTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGAT 242510 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | |||||| || | ||||| ||| || || Sbjct 242509 CTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCC 242450 Query 133634 GGTCAGAGTTTTTACGAAAATCT 133656 || || || || ||||| |||| Sbjct 242449 CGTAAGGGTCTTAACGAAGATCT 242427 >seq7 Length=945956 Score = 100 bits (110), Expect = 3e-16 Identities = 124/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||| || |||||||| | ||| ||| ||||||||||||||| || ||| ||| Sbjct 573969 TTCTGGATGTTGTAATCAGAGA--GTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 574026 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| |||||||||||||||||||| || ||||| || |||||| ||||| | | Sbjct 574027 TGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGT 574086 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | ||||| | | || || |||| |||| ||| || ||||||| Sbjct 574087 CGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCA 574134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| ||| ||||||||||||||| || ||| | || Sbjct 574760 TTCTGGATGTTGTAGTCGGACAACGTTCGACC-GTCCTCGAGCTGCTTTCCGGCGAAGAT 574818 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| |||||||| || ||||| || |||||| |||| | || Sbjct 574819 CAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGACGTTGTC 574878 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | |||||||| | || || |||| |||| ||| || ||||| ||| Sbjct 574879 GATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAGA 574927 >seq15 Length=705085 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || |||||||| | | | | || |||||||| Sbjct 440269 AAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGGGTTCGTCCGTCCTCGA 440326 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| || Sbjct 440327 GCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGA 440386 Query 133573 TCT 133575 ||| Sbjct 440387 TCT 440389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419899628760