Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq41 95.1 2e-13 seq23 87.8 3e-11 >seq41 Length=199935 Score = 95.1 bits (104), Expect = 2e-13 Identities = 119/157 (76%), Gaps = 11/157 (7%) Strand=Plus/Minus Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCAAC---AAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||||||||| ||||| | ||||||||| |||||| |||| ||| || ||| Sbjct 183317 AAAGGCCGATTGGGCTCTCAAGTGGATCTCTTCGAAGGAGT-CCTC----CTTCGCTGAG 183263 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||||||| || || || |||||||| ||||| ||||| || || ||| |||| Sbjct 183262 CGACTCGTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGATCGTT-TGCTTCCAT 183204 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||| |||||||||||||| || ||||||||||| ||| Sbjct 183203 CTTCTGGCTCAAGAAGCGAGGACTCATGCCCGGACTT 183167 >seq23 Length=420069 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 259930 GCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAA 259989 |||||| || || || || || | ||| ||| |||||||||||| || | |||||| Sbjct 228729 GCTCTTCAACGCTGGAACTCCTCACCCTCAGCTTTCGTCGTGCTTCCTTGTCTCCATGAA 228670 Query 259990 GGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAG 260047 || || ||||||||||| ||||| ||||| |||||| |||||| | ||||| ||| Sbjct 228669 GGAGGACTCGATCGAGGGAATCTACGACACCCTCAAGTCGTGCGCCATGATCTCGAAG 228612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796828676138