Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq41 120 4e-22 seq6 91.5 2e-13 >seq41 Length=199935 Score = 120 bits (132), Expect = 4e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGC 94792 |||| || || |||| | || || ||||||||| | |||||| | | | ||| | Sbjct 183336 CAGTCCCCTGCATTCGACGAAAGGCCGATTGGGCTCTCAAGTGGATCTCTTCGAAGGAGT 183277 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||| |||||||||||| |||| || || || ||||| ||||||||||| || | Sbjct 183276 CCTCCTTCGCTGAGCGACTCGTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGAT 183217 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 | || ||| | || | ||||||||||||||||| |||||||| || || |||||| Sbjct 183216 CGTT-TGCTTCCATCTTCTGGCTCAAGAAGCGAGGACTCATGCCCGGACTTACGTTCTCC 183158 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||| | ||||| | || ||||| || ||| Sbjct 183157 AACGAGTTGATCTCGAGGGATGAGGGTCTTCAC 183125 >seq6 Length=1113472 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 169325 GAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGA 169384 || || || |||||||| ||| || |||||||||||||| ||||||||||| || Sbjct 331792 GAAGCCTCTCGAACATTGAGCAGCTTTCCTCGAAGAGGGAAGACTCCGTAGTGATCTCGT 331733 Query 169385 CCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATG 169444 || |||| | ||| || ||||| ||||||| || || || || |||||||| | |||| Sbjct 331732 CCGACGATGTCGAGTCCTGCGACGGCGAGAGCTTTGGCGGAATCTCCCTCGGTAAGGATG 331673 Query 169445 AGCGTACA 169452 || || || Sbjct 331672 AGGGTGCA 331665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259713676760