Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 120 9e-22 seq34 118 3e-21 >seq7 Length=945956 Score = 120 bits (132), Expect = 9e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| ||||| || || || || | ||||| ||||| ||||| || || || || |||| Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | || || || ||||||||||| ||||| || || |||||||| || ||||| || |||| Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 | |||| || || | || ||||| || || | ||||||||||| || Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 120 bits (132), Expect = 9e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || ||||| || | ||||| ||||| |||||||| |||||||| |||| Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | || ||||||||||||||||| ||||| || || || || || ||||| || || || | Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 | || | || || | || || || || || | ||||||||||| || Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 Score = 107 bits (118), Expect = 6e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || || || || | ||||| ||||| || || || |||||||| |||| Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | | ||||||||||||||||| ||||| || || ||||| || || || || || || | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 | || | |||||| | || || || || || | |||||||| || || Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 104 bits (114), Expect = 7e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || || ||||| || || || || || ||||| || ||||| Sbjct 574760 TTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATC 574819 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| |||||||| || || || |||||||| || || ||||| || || || Sbjct 574820 AATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGACGTTGTCG 574879 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||| || || | |||||| || || || | ||||||||||| || Sbjct 574880 ATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || |||||||| | |||||| || || || || || ||||| || || || Sbjct 573969 TTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATG 574028 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || ||||| ||||| || |||||||| || || || || || || || Sbjct 574029 AGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCG 574088 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || | || || | ||| || || || || | ||||||||||| Sbjct 574089 ATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 574132 >seq34 Length=267493 Score = 118 bits (130), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | ||||| || ||||| || || || || ||||| || | ||||| ||||| Sbjct 242634 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCC 242575 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||| ||||| || || |||||||||||||| ||||| || || ||| Sbjct 242574 TCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCC 242515 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || || || || || | || || | || || || | || | ||| Sbjct 242514 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTC 242455 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCT 140733 || || || || || || || || |||| Sbjct 242454 TTCCCCGTAAGGGTCTTAACGAAGATCT 242427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251507284647