Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 118 1e-21 seq41 107 2e-18 >seq23 Length=420069 Score = 118 bits (130), Expect = 1e-21 Identities = 266/397 (67%), Gaps = 16/397 (4%) Strand=Plus/Plus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||| |||||||| ||||||| |||| |||||| ||||| || || ||||| Sbjct 227002 GTGTAAGGCTCGAAGCACTCGTTGAAACCCAAGATCTGACTCGTCGAAGCCGTAGGCATA 227061 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATG--CGTCTTGATCTCGACCTTTAGG---- 78660 || || || || | || |||| | ||||| || | ||||| |||| | Sbjct 227062 GGAGCCACAAGCAACGAGTTCCTGATTCCATGAACGGC--GATCTTCTCCTTCAACGACA 227119 Query 78661 --CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGG 78718 | |||||||| || | | || | ||||||||||| ||||| ||||| || Sbjct 227120 CCCAGTCCCAAAGATCCGTAGGCGTAACACCCCACATGTCGTACTGAAGCTGACCCTGGG 227179 Query 78719 ACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA-- 78776 | | || || || | | | ||| ||| | |||||||| || |||||||||||| || Sbjct 227180 AGACGGGGGATCCTTGGTAGGTCGAGTAGGCTCCCTCCTTCTCGGCGAGTTCGCACGAAG 227239 Query 78777 -CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 |||| || || |||||||| | | |||||||| ||||||||| |||| Sbjct 227240 CCTCG---AGAGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTGGCCT 227296 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || |||| || | | | || ||||||||| | ||||| || || || || |||| Sbjct 227297 CGGGTCCGTCAAAGGGCATTCGAAGGATCATGAAGGCGTCGGCGAGTCCTTGCACTCCGA 227356 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGC 78932 |||| |||||||| ||||||||| ||||| || Sbjct 227357 CTCCGATGGGTCGGTGTCGCATGTTGGAGTTTCGAGC 227393 Score = 118 bits (130), Expect = 1e-21 Identities = 261/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 20072 GCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGAC 20131 || || || || || ||||| ||||| || |||| |||| || || || || |||||| Sbjct 227393 GCTCGAAACTCCAACATGCGACACCGACCCATCGGAGTCGGAGTGCAAGGACTCGCCGAC 227334 Query 20132 GTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGC 20191 | |||||||| || | | | || |||| ||| |||| ||||||||| Sbjct 227333 GCCTTCATGATCCTTCGAATGCCCTTTGACGGACCCGAGGCCAAGAAGCTCAACATCCAG 227274 Query 20192 ATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGAC 20251 |||||||| || | |||||||| || ||| || ||||||||||||||| | |||| Sbjct 227273 ATCTTCGAAACCATCTACCACGCCGCTCTCGAGGCTTCGTGCGAACTCGCCGAGAAGGAG 227214 Query 20252 GGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATG 20311 || | ||| ||| | | | || || |||| ||| ||||| || ||| |||||| Sbjct 227213 GGAGCCTACTCGACCTACCAAGGATCCCCCGTCTCCCAGGGTCAGCTTCAGTACGACATG 227154 Query 20312 TGGGGCGTCACTGAGAATGAGTTTTGGAGC------GCCCTCAAGGTTGAGATCAAGACC 20365 ||||| || || | || ||||| | | | |||| ||||| Sbjct 227153 TGGGGTGTTACGCCTACGGATCTTTGGGACTGGGTGTCGTTGAAGGAGAAGATCGCCGTT 227094 Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 || || | | ||||||||||| || || || ||||| || || ||||| |||||| Sbjct 227093 CATGGAATCAGGAACTCGTTGCTTGTGGCTCCTATGCCTACGGCTTCGACGAGTCAGATC 227034 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 |||| ||||||| |||||||| ||||| Sbjct 227033 TTGGGTTTCAACGAGTGCTTCGAGCCTTACAC 227002 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 79035 GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGA 79094 |||||| || || || || ||| |||| |||||| ||||| |||||| || || Sbjct 227583 GATGAAGGTAGGGAGAGCCATCGAGGCCAAGTTGCAGACGGCGACCTCGTCGGGAGCGGA 227642 Query 79095 AACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||||| || ||||| | || |||||||||||||| |||| |||||||||||| Sbjct 227643 GTACTCGATGATCTCAGTGCAGAGGTTCGACGACTTGATGGTTCCGAGGTTCTTCTGGTT 227702 Query 79155 GCTCTTCTCGTTACAGGCGTCCT 79177 | ||||| ||| |||||||| Sbjct 227703 GGACTTCTGGTTGGCGGCGTCCT 227725 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT 79730 ||| ||||| |||||| |||||| || |||||||| |||||||||||||| ||||| Sbjct 228612 CTTCGAGATCATGGCGCACGACTTGAGGGTGTCGTAGATTCCCTCGATCGAGTCCTCCTT 228671 Query 79731 CATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 ||| | ||| |||||||| ||| | ||| |||| || || ||||||||||| Sbjct 228672 CATGGAGACAAGGAAGCACGACGAAAGCTGAGGGTGAGGAGTTCCAGCGTTGAAGAG 228728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 19827 AGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACC 19886 |||||||||| ||| ||||| || ||||||||| |||| | ||||||||||| |||| Sbjct 227725 AGGACGCCGCCAACCAGAAGTCCAACCAGAAGAACCTCGGAACCATCAAGTCGTCGAACC 227666 Query 19887 TGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGT 19946 | || ||||| ||||| ||| ||| || |||||| ||||| || || |||| | Sbjct 227665 TCTGCACTGAGATCATCGAGTACTCCGCTCCCGACGAGGTCGCCGTCTGCAACTTGGCCT 227606 Query 19947 C 19947 | Sbjct 227605 C 227605 >seq41 Length=199935 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCT--GGAG-C 59968 |||||| ||| || || ||| || || ||||| | ||||||| | | |||| | Sbjct 183334 GTCCCCTGCA-TTCGACGAAAGGCCGATTGGGCTCTCAAGTGGATCTCTTCGAAGGAGTC 183276 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 || || || | || ||| | ||||| || ||| || |||||||||||||| || || Sbjct 183275 CTCCTTCGCTGAGCGACTCGTCGCTTTCGCTGCCGTCGAGGGAATCTTCTTCTCCGGATC 183216 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||| | | || ||||||||||| ||||| || |||||||| || || | |||||||| Sbjct 183215 GTTTGCTTCCATCTTCTGGCTCAAGAAGCGAGGACTCATGCCCGGACTTACGTTCTCCAA 183156 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| |||| || |||| ||||| || || Sbjct 183155 CGAGTTGATCTCGAGGGATGAGGGTCTTCA 183126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523778372560