Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq34 152 6e-32 seq7 114 1e-20 seq15 84.2 2e-11 >seq34 Length=267493 Score = 152 bits (168), Expect = 6e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| ||||| || ||||| || || | ||||| ||||| || | | Sbjct 242429 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 242488 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | |||||||| || ||||||||||||||||| ||||| || |||||||| Sbjct 242489 ATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAGCGA 242548 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || ||||| ||||| |||||||||| || ||||| | || || || |||| Sbjct 242549 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 242608 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| ||||| ||||| | || | |||||||| || ||| Sbjct 242609 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGGA 242650 >seq7 Length=945956 Score = 114 bits (126), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || ||||| ||||| ||||| || | || ||||| Sbjct 573744 CTCACTGGAAAGACGATCACCCTCGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAG 573685 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||||||||||||||| ||||| || ||||| || | || || ||||| Sbjct 573684 GCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAACGATTGATCTTCGCTGGA 573625 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 ||||| |||||||||| || ||||| | ||||| || |||| ||||| Sbjct 573624 AAGCAGCTCGAGGATGGACGAACCCTCTCCGACTACAACATCCAGAAAGG 573575 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| || || || | ||| | || | ||||| Sbjct 574132 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGTCGGACACCATCGACAACGTCAAGGCG 574073 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||||||||| ||||| ||||||||||| || ||||| || || ||| Sbjct 574072 AAGATCCAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGACTCATTTTCGCCGGAAAG 574013 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 || |||||||| | ||| || || | || || || |||| |||| Sbjct 574012 CAGCTCGAGGACGGTCGAACACTCTCTGATTACAACATCCAGAAGG 573967 Score = 105 bits (116), Expect = 8e-18 Identities = 126/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 575317 CTCACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAG 575258 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || || |||||||||||||| ||||| || ||||| || || || || ||||| Sbjct 575257 GCTAAGATCCAAGACAAGGAGGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 575198 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 |||||||| ||||||| || || || | || || || |||| ||||| Sbjct 575197 AAGCAACTTGAGGATGGACGAACTCTTTCCGATTACAACATCCAGAAAGG 575148 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || || || || || ||||| || | || | || | || Sbjct 574537 CTTACCGGAAAGACCATCACCCTGGAAGTCGAGTCCTCCGACACGATCGATAACGTCAAA 574478 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || |||||||||||||||||||| ||||| || || ||||| || || || || || Sbjct 574477 GCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCCGGG 574418 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || ||||||| ||| || || | ||||| || Sbjct 574417 AAGCAGCTTGAGGATGGTCGAACTCTCTCGGACTACAA 574380 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| || ||||| |||||||| || || | || | || | || Sbjct 574926 CTCACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACGATCGACAACGTCAAA 574867 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| ||||||||||| | || || || || Sbjct 574866 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGATCTTCGCCGGA 574807 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| |||||||| | ||| || | | ||||| || |||| |||| Sbjct 574806 AAGCAGCTCGAGGACGGTCGAACGTTGTCCGACTACAACATCCAGAAGG 574758 >seq15 Length=705085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || ||||||||||| || || || ||||||||||| || || || || || ||||| Sbjct 440387 ATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTCATCTTCGCCGGAAAGCAG 440328 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| | || ||||| | || || || |||| ||||| || || ||||| Sbjct 440327 CTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCGACCCTTCA 440272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309337796880