Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq34 87.8 1e-12 seq7 87.8 1e-12 seq15 84.2 1e-11 >seq34 Length=267493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||| | ||||| || || ||| |||||| || ||||| ||||| ||| Sbjct 242649 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 242590 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || || || || || || || || | ||||| || || || || Sbjct 242589 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 242530 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 242529 ATTCCCTCCTTGTCCTGGATCTT 242507 >seq7 Length=945956 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 34508 GAGTGCTCTCCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTA 34566 ||| |||| ||||| |||||||| || || || || ||||| | || ||||| || || Sbjct 574359 GAGCGCTCACCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTC 574418 Query 34567 CCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGT 34626 ||||| || || | |||||||| || || || | |||||||||||| ||| || | Sbjct 574419 CCGGCGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTC-CTGAATCTTGGC 574477 Query 34627 TTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 ||| ||| || || ||||| | ||| ||||||| ||| || || || ||||| Sbjct 574478 TTTGACGTTATCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGT 574534 >seq15 Length=705085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||| || ||||| ||||| ||||| ||||| |||| || Sbjct 440266 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCGTCCTCG 440325 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||||| ||||| || || | |||||||||||| | Sbjct 440326 AGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGG 440385 Query 34618 ATCT 34621 |||| Sbjct 440386 ATCT 440389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729028470717